mRNA_H-elongata_contig123739.1791.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123739.1791.1
Unique NamemRNA_H-elongata_contig123739.1791.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: D8LJQ4_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ4_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 4.870e-58
Identity = 83/131 (63.36%), Postives = 109/131 (83.21%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTVNGE 393
            +V CF +NPG+LMYGMMC+VY+TG WLLLASYL LPVSTTH+T+G++IGM + YGG  CVVW + +D FPY++GV+AI  SWV+SP+ + I+S  +F TVR+ VLRSPNAF RSF+V+PILV+  +TV+GE
Sbjct:   28 KVECFLDNPGVLMYGMMCVVYTTGMWLLLASYLALPVSTTHATIGAMIGMTVVYGGAGCVVWFQESDSFPYVKGVAAIAVSWVLSPIFSGIVSLLVFLTVRAFVLRSPNAFGRSFWVFPILVMVAITVDGE 158          
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: D8LJQ6_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 7.880e-56
Identity = 85/129 (65.89%), Postives = 108/129 (83.72%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTVN 387
             V CF +NPG+LMYGMMC+VY+TG WLLLASYLELPVSTTHST+G+IIGMA+AY G+ CVVW + +DIFPY +GV+AI  SWV+SP+ + + S  +F TVR+ VLRSPNAF RSF+V+P+LV+ T+ VN
Sbjct:   49 NVECFLDNPGILMYGMMCVVYTTGMWLLLASYLELPVSTTHSTIGAIIGMAVAYAGSGCVVWYQESDIFPYFKGVAAIAVSWVLSPIFSGVASLLVFLTVRAFVLRSPNAFGRSFWVFPVLVMVTIAVN 177          
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.610e-53
Identity = 80/131 (61.07%), Postives = 105/131 (80.15%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTVNGE 393
            ++ CF +NPG+LMYG MC+VY+TG WLLLASY ELPVSTTHST+G I+GMAM Y G  CVVW E  D+FPYL+G+SAIVASWV+SP+ +A+++ +LF  +R+ VLRSP++ QR+  V+P LV  T+ VNG 
Sbjct:    4 KIECFTDNPGILMYGNMCVVYTTGIWLLLASYFELPVSTTHSTIGGIVGMAMTYRGADCVVWYEEADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHQRAIVVFPFLVTATIAVNGN 134          
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: D8LJP9_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP9_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 7.050e-53
Identity = 76/131 (58.02%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTVNGE 393
            QVSCF +NPG+LMYGMMC++Y+T  WLLLASYLELPVS T ST+ SI+GM +AYGG +CVVW   ++ FP  +GV AI+  W++SP+ A + SC +F  +R+ VLRSP+AF+RSF+V+P+LV+  V ++GE
Sbjct:    6 QVSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSFWVFPVLVMIIVALDGE 136          
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 8.490e-51
Identity = 80/129 (62.02%), Postives = 102/129 (79.07%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTVN 387
             + CF +NPG+LMYG MC+VY+TG WLLLAS+ ELPVSTTHSTVG I+GMAM Y G  CVVW E  D+FPYL+GVSAIVASW +SPL +A+++ +LF  +R+ VLRSP+A +R+  V+P LV  T+ VN
Sbjct:   88 DIECFEDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTVGGIVGMAMTYRGADCVVWYEEADLFPYLKGVSAIVASWALSPLFSAVIAVALFLFMRTFVLRSPDAHKRAINVFPFLVTATIAVN 216          
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.810e-49
Identity = 76/129 (58.91%), Postives = 103/129 (79.84%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTVN 387
               CF +NPG+LMYG MC+VY+TG WLLLAS+ ELPVSTTHST+G I+GMA+ Y G  CVVW E+ D+FPYL+G+SAIVASWV+SP+ +A+++ +LF  +R+ VLRSP++ +R+  V+P LV  T+ VN
Sbjct:   89 DTECFEDNPGILMYGNMCVVYTTGFWLLLASFFELPVSTTHSTIGGIVGMAITYRGPDCVVWYEKADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHKRAIVVFPFLVTATIAVN 217          
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 7.130e-46
Identity = 72/129 (55.81%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTVN 387
            QV CF +NPG+LMYG MC+VY++G WLLLAS+ ELPVSTTH+TVG I+GMAM Y G  CVVW E  + FPYL+GVSAIVASW +SP+ +A+++ +L++ +R+ VLR+  + +++  ++P LV  T+ VN
Sbjct:   96 QVGCFVDNPGILMYGNMCVVYTSGFWLLLASFFELPVSTTHATVGGIVGMAMTYRGADCVVWYEEAEFFPYLKGVSAIVASWALSPVLSAVIAVALYFFMRTFVLRADQSQKKAINIFPCLVTVTIAVN 224          
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 8.790e-45
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTV 384
             + CF +NPG+LMYG MC+VY+ G WLLLAS+ ELPVSTTHST+G I+GM M Y G  CVVW E  D FPY++GV AIV SW + P+ + +++  LF+ VR+LVLRS +A  RS  V+P+LV  T+ +
Sbjct:   89 DIECFTDNPGILMYGNMCVVYTNGIWLLLASFFELPVSTTHSTIGGIVGMTMTYRGADCVVWYEEADHFPYIKGVFAIVVSWALFPVLSGVVATLLFFVVRALVLRSEHALNRSMIVFPLLVTVTIAI 216          
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: A0A7S0QA31_9EUKA (Phosphate transporter n=3 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QA31_9EUKA)

HSP 1 Score: 158 bits (399), Expect = 1.820e-43
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTVN 387
             + CF + P +LMYG +C+++S G WLLLASYLE+PVSTTHS VG +IGMAM   G +CV+W E TD FPY++GVSAIV SW +SPL +AI +  LF  VR+ VLR+ +++ R+F VYP+LV  T+ +N
Sbjct:   78 DIDCFVDEPAVLMYGCLCVIFSVGGWLLLASYLEMPVSTTHSCVGGMIGMAMVAHGPACVIWAEPTDQFPYVKGVSAIVISWFLSPLLSAISAMGLFLLVRTTVLRAKDSYDRAFKVYPLLVGVTIFIN 206          
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Match: A0A7S2V1L4_9STRA (Phosphate transporter n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L4_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.740e-42
Identity = 71/128 (55.47%), Postives = 97/128 (75.78%), Query Frame = 1
Query:    1 QVSCFANNPGMLMYGMMCIVYSTGAWLLLASYLELPVSTTHSTVGSIIGMAMAYGGTSCVVWQERTDIFPYLRGVSAIVASWVVSPLCAAILSCSLFYTVRSLVLRSPNAFQRSFYVYPILVLGTVTV 384
             V CF ++  MLMYGMMC+++ TG WLLLA+ LELPVSTTHST+G IIGM MA  G+SCV+W+  TD FPY++GV+A+V SW++SPL +AI++   F T R+ VLR P+A++R+   YPI V  T+ +
Sbjct:   79 DVECFVDDGEMLMYGMMCVIFVTGVWLLLATVLELPVSTTHSTIGGIIGMTMAAKGSSCVIWKTDTDQFPYVKGVAAVVISWILSPLFSAIVAAIFFLTTRATVLRHPDAYKRALLSYPIFVGCTLVI 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123739.1791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJQ4_ECTSI4.870e-5863.36High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ6_ECTSI7.880e-5665.89Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JNL8_9PHAE1.610e-5361.07Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LJP9_ECTSI7.050e-5358.02High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A6H5JNE7_9PHAE8.490e-5162.02Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI1.810e-4958.91Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI7.130e-4655.81Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI8.790e-4555.47Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A7S0QA31_9EUKA1.820e-4355.81Phosphate transporter n=3 Tax=Coccolithus braarudi... [more]
A0A7S2V1L4_9STRA1.740e-4255.47Phosphate transporter n=1 Tax=Fibrocapsa japonica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123739contigH-elongata_contig123739:998..1390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123739.1791.1prot_H-elongata_contig123739.1791.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123739 999..1382 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.092689-UTR-H-elongata_contig123739:997..9981622929729.092689-UTR-H-elongata_contig123739:997..998Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123739 998..998 -
1691679135.6110175-UTR-H-elongata_contig123739:997..9981691679135.6110175-UTR-H-elongata_contig123739:997..998Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123739 998..998 -
1622929729.1218352-UTR-H-elongata_contig123739:1382..13901622929729.1218352-UTR-H-elongata_contig123739:1382..1390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123739 1383..1390 -
1691679135.6290739-UTR-H-elongata_contig123739:1382..13901691679135.6290739-UTR-H-elongata_contig123739:1382..1390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123739 1383..1390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.1095219-CDS-H-elongata_contig123739:998..13821622929729.1095219-CDS-H-elongata_contig123739:998..1382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123739 999..1382 -
1691679135.6194448-CDS-H-elongata_contig123739:998..13821691679135.6194448-CDS-H-elongata_contig123739:998..1382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123739 999..1382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123739.1791.1

>prot_H-elongata_contig123739.1791.1 ID=prot_H-elongata_contig123739.1791.1|Name=mRNA_H-elongata_contig123739.1791.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MLREQSGNAHVWHDVHRVLDGGMASPSLVPRAAGIHDTLYRGQHHRDGHG
VRRNELRGMAGEDGHIPLPPWGVGHRRLVGGLAPMRSDPVLLAILHRALS
RSPLAERLSAVLLRVPDPGPRNRDGQR*
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mRNA from alignment at H-elongata_contig123739:998..1390-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123739.1791.1 ID=mRNA_H-elongata_contig123739.1791.1|Name=mRNA_H-elongata_contig123739.1791.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig123739:998..1390- (Himanthalia elongata Himel1 dioecious)
CAGGTGTCATGCTTCGCGAACAATCCGGGAATGCTCATGTATGGCATGAT GTGCATCGTGTACTCGACGGGGGCATGGCTTCTCCTAGCCTCGTACCTCG AGCTGCCGGTATCCACGACACACTCTACCGTGGGCAGCATCATCGGGATG GCCATGGCGTACGGAGGAACGAGCTGCGTGGTATGGCAGGAGAGGACGGA CATATTCCCCTACCTCCGTGGGGTGTCGGCCATCGTCGCCTCGTGGGTGG TCTCGCCCCTATGCGCAGCGATCCTGTCCTGCTCGCTATTCTACACCGTG CGCTCTCTCGTTCTCCGCTCGCCGAACGCCTTTCAGCGGTCCTTTTACGT GTACCCGATCCTGGTCCTCGGAACCGTGACGGTCAACGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig123739:998..1390-

>mRNA_H-elongata_contig123739.1791.1 ID=mRNA_H-elongata_contig123739.1791.1|Name=mRNA_H-elongata_contig123739.1791.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig123739:998..1390- (Himanthalia elongata Himel1 dioecious)
ATGCTTCGCGAACAATCCGGGAATGCTCATGTATGGCATGATGTGCATCG
TGTACTCGACGGGGGCATGGCTTCTCCTAGCCTCGTACCTCGAGCTGCCG
GTATCCACGACACACTCTACCGTGGGCAGCATCATCGGGATGGCCATGGC
GTACGGAGGAACGAGCTGCGTGGTATGGCAGGAGAGGACGGACATATTCC
CCTACCTCCGTGGGGTGTCGGCCATCGTCGCCTCGTGGGTGGTCTCGCCC
CTATGCGCAGCGATCCTGTCCTGCTCGCTATTCTACACCGTGCGCTCTCT
CGTTCTCCGCTCGCCGAACGCCTTTCAGCGGTCCTTTTACGTGTACCCGA
TCCTGGTCCTCGGAACCGTGACGGTCAACGGTGAATGCTTCGCGAACAAT
CCGGGAATGCTCATGTATGGCATGATGTGCATCGTGTACTCGACGGGGGC
ATGGCTTCTCCTAGCCTCGTACCTCGAGCTGCCGGTATCCACGACACACT
CTACCGTGGGCAGCATCATCGGGATGGCCATGGCGTACGGAGGAACGAGC
TGCGTGGTATGGCAGGAGAGGACGGACATATTCCCCTACCTCCGTGGGGT
GTCGGCCATCGTCGCCTCGTGGGTGGTCTCGCCCCTATGCGCAGCGATCC
TGTCCTGCTCGCTATTCTACACCGTGCGCTCTCTCGTTCTCCGCTCGCCG
AACGCCTTTCAGCGGTCCTTTTACGTGTACCCGATCCTGGTCCTCGGAAC
CGTGACGGTCAACGGTGA
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