mRNA_H-elongata_contig123712.1789.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123712.1789.1
Unique NamemRNA_H-elongata_contig123712.1789.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig123712.1789.1 vs. uniprot
Match: D7G574_ECTSI (RME-8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G574_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.210e-30
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 RDVEVVWSPVNRDMLGRLLLQQLQDLERETQMLSFKGRGGKTTHDALAWNDVACEVPWHKMVGDVKVGRYYLEQLV 228
            RDVEVVWSPV+RD LG+LLL+QLQ+LERET+ LS+KGRG +   +ALAWND A EVPWH MVG+VKVGRYYLEQL+
Sbjct:  917 RDVEVVWSPVHRDALGQLLLEQLQELERETRRLSYKGRG-RAPIEALAWNDAAWEVPWHNMVGEVKVGRYYLEQLI 991
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123712.1789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G574_ECTSI5.210e-3075.00RME-8_N domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123712contigH-elongata_contig123712:1266..1493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929728.8324058-CDS-H-elongata_contig123712:1265..14931622929728.8324058-CDS-H-elongata_contig123712:1265..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123712 1266..1493 -
1691679135.4737868-CDS-H-elongata_contig123712:1265..14931691679135.4737868-CDS-H-elongata_contig123712:1265..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123712 1266..1493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123712.1789.1prot_H-elongata_contig123712.1789.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123712 1266..1493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123712.1789.1

>prot_H-elongata_contig123712.1789.1 ID=prot_H-elongata_contig123712.1789.1|Name=mRNA_H-elongata_contig123712.1789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
RDVEVVWSPVNRDMLGRLLLQQLQDLERETQMLSFKGRGGKTTHDALAWN
DVACEVPWHKMVGDVKVGRYYLEQLV
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mRNA from alignment at H-elongata_contig123712:1266..1493-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123712.1789.1 ID=mRNA_H-elongata_contig123712.1789.1|Name=mRNA_H-elongata_contig123712.1789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig123712:1266..1493- (Himanthalia elongata Himel1 dioecious)
CGCGACGTGGAGGTTGTCTGGAGCCCGGTTAACCGCGACATGCTCGGGAG
GCTTCTGCTCCAGCAATTACAGGATCTTGAACGCGAAACTCAGATGCTTT
CTTTCAAGGGACGCGGTGGAAAAACGACACACGACGCGCTAGCCTGGAAC
GACGTCGCATGTGAAGTTCCCTGGCACAAGATGGTTGGAGATGTCAAGGT
TGGACGCTACTACCTCGAGCAGCTTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig123712:1266..1493-

>mRNA_H-elongata_contig123712.1789.1 ID=mRNA_H-elongata_contig123712.1789.1|Name=mRNA_H-elongata_contig123712.1789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig123712:1266..1493- (Himanthalia elongata Himel1 dioecious)
CGCGACGTGGAGGTTGTCTGGAGCCCGGTTAACCGCGACATGCTCGGGAG
GCTTCTGCTCCAGCAATTACAGGATCTTGAACGCGAAACTCAGATGCTTT
CTTTCAAGGGACGCGGTGGAAAAACGACACACGACGCGCTAGCCTGGAAC
GACGTCGCATGTGAAGTTCCCTGGCACAAGATGGTTGGAGATGTCAAGGT
TGGACGCTACTACCTCGAGCAGCTTGTTCGCGACGTGGAGGTTGTCTGGA
GCCCGGTTAACCGCGACATGCTCGGGAGGCTTCTGCTCCAGCAATTACAG
GATCTTGAACGCGAAACTCAGATGCTTTCTTTCAAGGGACGCGGTGGAAA
AACGACACACGACGCGCTAGCCTGGAACGACGTCGCATGTGAAGTTCCCT
GGCACAAGATGGTTGGAGATGTCAAGGTTGGACGCTACTACCTCGAGCAG
CTTGTT
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