prot_H-elongata_contig12370.1788.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12370.1788.1
Unique Nameprot_H-elongata_contig12370.1788.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length148
Homology
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: A0A6H5JTN9_9PHAE (MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN9_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 4.260e-49
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 0
Query:    1 MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTF----VNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPIC 145
            +A LESFNA VS+NTFENNKYG+RFSVG A + F++N I N++KYN Y+Y GSD+PDVV SGR Q+NVFS N   G++E IK+K++D  QF DN F     +    RFD++T   M GN+GLD  E ELKVTN +CFD+ SDS Y P+C
Sbjct:   44 LAMLESFNADVSDNTFENNKYGVRFSVGCADNVFSENTISNNSKYNAYSYLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDDATGNLMKGNTGLDDGEFELKVTNDSCFDEESDSGYEPLC 192          
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.390e-46
Identity = 84/145 (57.93%), Postives = 105/145 (72.41%), Query Frame = 0
Query:    1 MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTFVNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPIC 145
            MA +ESFNA VSNN FE+NKYG+R SVG A + F+ NVI +S++YN+YTYEGSDDP VVDSGR Q N+FSDN I G  E+IKL  +D  +F DNTF +  T RF+++    M GN+GL      LKV+ GACFD  SDS+Y P+C
Sbjct:  183 MALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGNTGLG--SATLKVSKGACFDKKSDSDYKPVC 325          
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.400e-45
Identity = 85/145 (58.62%), Postives = 104/145 (71.72%), Query Frame = 0
Query:    1 MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTFVNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPIC 145
            MA +ESFNA VSNN FE+NKYG+R SVG A + F+ NVI +S+KYN+YTYEGSDDP VVDSGR Q N+FSDN I G  E+IKL  +D  +F DNTF    T RF+++    M GN+GL      LKV+ GACFD  SDS+Y P+C
Sbjct:  360 MALMESFNADVSNNKFEDNKYGVRLSVGCADNVFSKNVISDSSKYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRAKTARFEDAETTLMSGNTGLG--SATLKVSKGACFDKKSDSDYKPVC 502          
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 3.360e-44
Identity = 84/149 (56.38%), Postives = 105/149 (70.47%), Query Frame = 0
Query:    1 MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTF----VNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPIC 145
            +A LESFNA VS NTFENNKYG+R SVG A + F++N+I N++KYN YTY GSD+PDVV SGR Q+NVFS N   G+ E IK+K++D  QF DN F     +    RFD++    M GN+GLD  + ELKVTN +CFD  SDS Y P+C
Sbjct:  364 LAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYEPVC 512          
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.210e-43
Identity = 84/149 (56.38%), Postives = 104/149 (69.80%), Query Frame = 0
Query:    1 MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTF----VNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPIC 145
            +A LESFNA VS NTFENNKYG+RFSVG A + F++N I N+ +YN Y+Y G+D+PDVV SGR Q+NVFS N   G+ E IK+K++D  QF DN F     +    RFDN+T   M GN+GLD  E ELKV N ACFD  +DS Y P+C
Sbjct:  360 LAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPVC 508          
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.310e-40
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 0
Query:    1 MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTFVNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPI 144
            +A +ESFNA VS+N FENNKYGIRFSVGS  + F +NVI  ST+Y+ Y+Y GSD PDVVDSGR Q NVF +N I+G  E+IKL  +D  QF DNTF + TT RF+++    M GN GL++ +  LKV NGA FD SSD  + PI
Sbjct:  357 LAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGNIGLNMSK--LKVVNGASFDASSDYGFEPI 498          
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 6.860e-36
Identity = 76/144 (52.78%), Postives = 99/144 (68.75%), Query Frame = 0
Query:    1 MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTFVNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPI 144
            +A LESFNA VS+NTFENNKYG+R SVG   + F+ NVI  S ++N ++Y G+D P+VVDSGR Q NVF +N I+G  E+I LK++D  QF DNTF +    RF ++T   M GN+GL   +  LKV  GA FD+SSD  + PI
Sbjct:  331 LAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGNTGLA--DSTLKVDRGATFDESSDHGFEPI 472          
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 7.810e-36
Identity = 72/144 (50.00%), Postives = 95/144 (65.97%), Query Frame = 0
Query:    1 MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTFVNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPI 144
            +A +ESFNA VS+N FENNKYG+R SVG   + F+ NVI  STKYN Y+Y G+D PDVV SGR + N F +N IVG  E +K+  +D  +F  N+F +  T RFD++    M GN+GL   + +LKV NGA FD  +D  + PI
Sbjct:  124 LAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGNTGLT--DTKLKVHNGASFDKRADYGFEPI 265          
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 137 bits (345), Expect = 1.860e-35
Identity = 76/145 (52.41%), Postives = 93/145 (64.14%), Query Frame = 0
Query:    1 MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTFVNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPIC 145
            MA +E+FNA VSNN FE+NKYGIR SVG A + F+ N I  S+KYN+YTY+GSD P VVDSGR Q          G  E +KL  +D  +F DNTF +  T RF++     M GNSGL      LKVT+G+CFD  SDS Y P+C
Sbjct:  357 MALMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVDSGRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFKSAKTIRFEDCQGTLMSGNSGLG--GASLKVTDGSCFDKKSDSAYKPVC 499          
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Match: A0A6H5KHR6_9PHAE (MEP22d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR6_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.730e-29
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = 0
Query:   42 STKYNIYTYEGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTF----VNTTTTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPIC 145
            S +YN Y+Y GSD+PDVV SGR Q+NVFS N   G++E IK+K++D  QF DN F     +    RFDN+T   M GN+GLD  E ELKV N ACFD  SDS Y P+C
Sbjct:   11 SFRYNAYSYLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATGNLMQGNTGLDDGEFELKVDNDACFDGESDSGYEPVC 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12370.1788.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JTN9_9PHAE4.260e-4957.72MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
Q7XAJ9_9PHAE1.390e-4657.93Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAK2_9PHAE1.400e-4558.62Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
D7FXE4_ECTSI3.360e-4456.38Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI1.210e-4356.38Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
Q7XAJ7_9PHAE2.310e-4057.64Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAJ8_9PHAE6.860e-3652.78Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAK0_9PHAE7.810e-3650.00Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
A8CEP1_SACJA1.860e-3552.41Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
A0A6H5KHR6_9PHAE7.730e-2954.63MEP22d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 64..85
e-value: 3500.0
score: 3.3
coord: 29..51
e-value: 900.0
score: 7.6
coord: 86..122
e-value: 8800.0
score: 0.5
coord: 6..27
e-value: 0.15
score: 21.1
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 2..141
e-value: 1.4E-9
score: 39.4
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 5..100
e-value: 1.5E-9
score: 37.9
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 6..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12370contigH-elongata_contig12370:1128..2046 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12370.1788.1mRNA_H-elongata_contig12370.1788.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12370 385..4551 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12370.1788.1 ID=prot_H-elongata_contig12370.1788.1|Name=mRNA_H-elongata_contig12370.1788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MAFLESFNATVSNNTFENNKYGIRFSVGSAYSYFTDNVIKNSTKYNIYTY
EGSDDPDVVDSGRPQSNVFSDNLIVGSSEAIKLKQSDDMQFFDNTFVNTT
TTRFDNSTYVSMLGNSGLDLDEVELKVTNGACFDDSSDSEYVPICDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR012334Pectin_lyas_fold
IPR039448Beta_helix
IPR011050Pectin_lyase_fold/virulence