mRNA_H-elongata_contig123684.1785.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 138 bits (347), Expect = 3.960e-35 Identity = 90/228 (39.47%), Postives = 124/228 (54.39%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDY---ITPQELSIKCVRTDNGSEFEGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIAL-IEELDNIINVPREK-LWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSVREHKMVPKGEKCLFMGIP 675
+KG+ + K+TD RA+ K R F+++GG M+ S+ GN Y +I DD TR+ V F+K KSD AA + DY P E+ + RTD G EF+G+F R I E TPP+TP+YNGVAE ALGLL + A+A I+ + + P LWA+AI AC N + T G KSP EL+ G P PF +S R+ + P+ K +G+P
Sbjct: 175 SKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFV--ARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLP 399
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.130e-34 Identity = 92/230 (40.00%), Postives = 124/230 (53.91%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 669
AKG +P T RA K QR FVD+ G + SL G Y +I DDYTR+ V F+K KSD A + + P ++ + VR+DNG EF EGEF R + I E TP +P+YNGVAE ALGL+++ A+A + + N P LWA+AI ++C+ N + TS KSPYE+W G P PF ++ A V R HK PK +KC ++G
Sbjct: 714 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 937
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.130e-34 Identity = 92/230 (40.00%), Postives = 124/230 (53.91%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 669
AKG +P T RA K QR FVD+ G + SL G Y +I DDYTR+ V F+K KSD A + + P ++ + VR+DNG EF EGEF R + I E TP +P+YNGVAE ALGL+++ A+A + + N P LWA+AI ++C+ N + TS KSPYE+W G P PF ++ A V R HK PK +KC ++G
Sbjct: 549 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 772
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.140e-34 Identity = 92/230 (40.00%), Postives = 124/230 (53.91%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 669
AKG +P T RA K QR FVD+ G + SL G Y +I DDYTR+ V F+K KSD A + + P ++ + VR+DNG EF EGEF R + I E TP +P+YNGVAE ALGL+++ A+A + + N P LWA+AI ++C+ N + TS KSPYE+W G P PF ++ A V R HK PK +KC ++G
Sbjct: 562 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 785
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.140e-34 Identity = 92/230 (40.00%), Postives = 124/230 (53.91%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 669
AKG +P T RA K QR FVD+ G + SL G Y +I DDYTR+ V F+K KSD A + + P ++ + VR+DNG EF EGEF R + I E TP +P+YNGVAE ALGL+++ A+A + + N P LWA+AI ++C+ N + TS KSPYE+W G P PF ++ A V R HK PK +KC ++G
Sbjct: 705 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 928
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.000e-34 Identity = 91/226 (40.27%), Postives = 122/226 (53.98%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYITPQELS-IKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII-NVPREK-LWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 669
AKG +P T RA K QRFFV++ G + SL G Y +I DDYTR+ V F+K KSD A + + S + VR+DNG EF EGEF R + I E TP +P+YNGVAE ALGL+++ AIA + + P + LWA+AI ++C+ N + TS KSPYE+W G P PF ++ A V R HK P +KC ++G
Sbjct: 347 AKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPTAQKCFYLG 570
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 138 bits (347), Expect = 5.730e-34 Identity = 89/228 (39.04%), Postives = 120/228 (52.63%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYITPQELSIKCV-RTDNGSEFEGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIAL-IEELDNIINVPREK-LWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSVREHKMVPKGEKCLFMGIPRN 681
+KG+ V K+T RA K R ++D+GG MK S+ GN Y +I DD++R+ V F+K KSD + DY T C+ RTD G EF+G+F R I E TPP TP+YNGVAE ALGL+ + A+A I+ + P LWA+AI AC N + S +G KS YE++ P PF +S R+ K PKGEK ++G N
Sbjct: 2 SKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAVFKSRRKAKSQPKGEKGWYLGPAHN 228
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE) HSP 1 Score: 138 bits (348), Expect = 6.910e-34 Identity = 90/230 (39.13%), Postives = 124/230 (53.91%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 669
AKG +P T RA+ + QR F+D+ G + SLVG Y +I D YTR+ V F+K KSD A + + P ++ + VR+DNG EF EGEF R + I E TP +P+YNGVAE ALGL+++ A+A + + N P WA+AI +AC+ N + TS KSPYE+W G P PF ++ A V R HK PK +KC ++G
Sbjct: 575 AKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYP--SFWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 798
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE) HSP 1 Score: 127 bits (320), Expect = 8.220e-33 Identity = 86/221 (38.91%), Postives = 115/221 (52.04%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSVREHKMVPK 645
AKG +P T RA K QR FVD+ G + SL G Y +I DDYTR+ V F+K KSD A + + P ++ + VR+DNG EF EGEF R + I E TP +P+Y+GVAE ALGL+ + A+A + + N P LWA+AI ++C+ N + TS KSPYE+W G P PF + + R HK PK
Sbjct: 15 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LIPAVYKVKRTHKSEPK 230
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE) HSP 1 Score: 133 bits (334), Expect = 4.910e-32 Identity = 89/230 (38.70%), Postives = 122/230 (53.04%), Query Frame = 1
Query: 7 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 669
AKG +P T A K QR FVD+ G ++ SL G Y +I DDYTR+ V F+K KSD A + + P ++ + VR+DNG EF EGEF R + I E TP P++NGVAE ALG +++ A+A + + N P LWA+AI ++C+ N + TS KSPYE+W G P PF ++ A V R HK PK +KC ++G
Sbjct: 550 AKGLSKPIPNKTSTGALKKLQRVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHIPEHNGVAERALGPIKDAALAARIQAPTLYPGAPNYP--SLWAKAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 773 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig123684.1785.1 >prot_H-elongata_contig123684.1785.1 ID=prot_H-elongata_contig123684.1785.1|Name=mRNA_H-elongata_contig123684.1785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp FQAKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDback to top mRNA from alignment at H-elongata_contig123684:1085..1768+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig123684.1785.1 ID=mRNA_H-elongata_contig123684.1785.1|Name=mRNA_H-elongata_contig123684.1785.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=684bp|location=Sequence derived from alignment at H-elongata_contig123684:1085..1768+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig123684:1085..1768+ >mRNA_H-elongata_contig123684.1785.1 ID=mRNA_H-elongata_contig123684.1785.1|Name=mRNA_H-elongata_contig123684.1785.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig123684:1085..1768+ (Himanthalia elongata Himel1 dioecious)back to top |