mRNA_H-elongata_contig123678.1784.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123678.1784.1
Unique NamemRNA_H-elongata_contig123678.1784.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 192 bits (487), Expect = 6.920e-52
Identity = 104/265 (39.25%), Postives = 156/265 (58.87%), Query Frame = 1
Query:    4 LDSEPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 798
            +D+ P ++ EA+AS EW +WK+A+  E+    + G +   + P G+  +G + VF  K D+DG I +YK  LVAQG+ Q+ G+ Y E  +P     S+R  LG+ A    E+ Q+DV  AYL  +++EEIY+  PE Y D   +V  L+K +YGL  +   W + F  +L + GF + +AD CVY+RI  G + + I V+VDDLL+ S T  D  +   +L + F +KDLGE    +G  I RDR  GT++  Q QYI+ +  RF
Sbjct:  875 IDNFPRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRF 1138          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177U2Z9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia walkeri TaxID=117179 RepID=A0A177U2Z9_9BASI)

HSP 1 Score: 177 bits (448), Expect = 3.470e-48
Identity = 96/265 (36.23%), Postives = 152/265 (57.36%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
            +P T+GEA A ++WP+W  A+ +E+    + G W+VV  P+G  ++ ++ V + K + D  I+KYK  LVA+GF QV+G+ Y+E  +PT     +R+   + AAL  ++ Q+D + AYL  K+K +IY+E+PE       +   L+  +YGL  +   W       L + GFQ+ ++DP ++ R   G    +  VYVDD++VA+    D E   R+L S F   DLG   + LG  ITRDRNAG++   Q +Y + + +RF  D
Sbjct:   37 DPRTVGEAMARTDWPKWHAAMLKELKSHEERGTWEVVRAPEGANLVTSKWVLRIKRNADATIQKYKGRLVARGFTQVQGVDYDETFAPTSRLQILRLFSALSAALDMKLHQIDFETAYLNAKLKHDIYMEVPEGVDALPDEALKLRLALYGLKQSGHDWHAALRDALASIGFQQCESDPTIFVR--DGKRAAMPLVYVDDIIVATPQGEDIEAVKRELLSLFKGTDLGPVHHVLGIRITRDRNAGSIHLHQERYAEEVLDRFGMD 299          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 180 bits (456), Expect = 9.690e-48
Identity = 95/261 (36.40%), Postives = 146/261 (55.94%), Query Frame = 1
Query:   16 PTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 798
            P T+ +A+ S EW  W+ A+  E       G W++ E  + + ++G+R VF  K D+ G++ +YK  LVAQGF Q+ G+ Y +  SP     ++R  + + A   WE+RQ+D+  AYL  +++EEI++E PE + D   +V  LK  +YGL  A  +W K    +L   GF R+ ADPCVY     G + + + V+VDD+++   ++   +  V  L   F +KDLGE    LG  I R+R   T+T  Q  YI T+ ERF
Sbjct:  855 PKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITI-LTVWVDDIILCGDSESRIDTTVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILERF 1114          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A8J4LUU8_9CHLO (Integrase catalytic domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LUU8_9CHLO)

HSP 1 Score: 176 bits (447), Expect = 1.570e-46
Identity = 102/267 (38.20%), Postives = 150/267 (56.18%), Query Frame = 1
Query:   10 SEPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSL-LKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
            SEP T+ EAQA S+WP WK A+  E+    +   W + E PK    +G + VFK K D +G IE+YK  LVA+GF Q +G+ + E  +P     S+R +L ++AA   E+ QLD+  A+L   ++EE++ E P  Y      V+  L++ +YGL  A   W       LE  GF+ S ADP ++ +   G   V I VYVDDLL+A  +    E+    L S F ++DLGE+ +YLG  I RDR+A TL   Q ++++ +  +F  D
Sbjct:  960 SEPNTLAEAQARSDWPHWKAAMDEEMKSLLENRTWDLEELPKSAKKIGLKWVFKLKRDANGNIERYKARLVAKGFTQKEGVDFGEVFAPVGKYTSLRALLAVVAAQNLELHQLDIKTAFLNGVLEEEVFTEQPAGYEQGGANVACHLRRALYGLRQAPRTWYVRLRSTLEQMGFKPSSADPGLFIK-GEGENRVHILVYVDDLLIACNSCAIAEEIKSQLRSVFEMRDLGESNFYLGFEIRRDRSAKTLHISQKRFVKELLSKFGMD 1225          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177T1Q9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Tilletia TaxID=13289 RepID=A0A177T1Q9_9BASI)

HSP 1 Score: 174 bits (441), Expect = 2.670e-46
Identity = 94/265 (35.47%), Postives = 150/265 (56.60%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
            +P T+GEA A  +WP+W  A+ +E+    + G W++V+ P+G  ++ ++ V + K + D  I+KYK  LVA+GF Q+ G+ Y+E  +PT     +R+   + AAL  E+ Q+D + AYL  K+K +IY+ +PE       +V  L+  +YGL  +   W       L + GFQ+ + DP ++ R  +G    ++ VYVDD++VA+    D E   R+L   F   DLG   + LG  +TRD  AGT+  DQ +Y + + ERF  D
Sbjct:  203 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMAVPEGVEALPDEVLKLRLALYGLKQSGHDWHVALRDALGSIGFQQCEFDPTIFVR--NGERAAMLLVYVDDIIVATPQGEDIEGVKRELLGLFKGTDLGPVHHVLGIRVTRDCKAGTIHLDQERYAEEVLERFGMD 465          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177U7F2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U7F2_9BASI)

HSP 1 Score: 176 bits (445), Expect = 2.690e-46
Identity = 94/265 (35.47%), Postives = 150/265 (56.60%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
            +P T+GEA A  +WP+W  A+ +E+    + G W++V+ P+G  ++ ++ V + K + D  I+KYK  LVA+GF Q+ G+ Y+E  +PT     +R+   + AAL  E+ Q+D + AYL  K+K +IY+E+PE       +V  L+  +YGL  +   W       L++ GF + + DP ++ R   G    ++ VYVDD++VA+    D E   ++L   F   DLG   + LG  +TRDR AGT+  DQ +Y   + ERF  D
Sbjct:  564 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMEVPEGVEALPDEVLKLRLALYGLKQSGHDWHAALRDALDSIGFLQCEFDPTIFVR--DGERTAMLLVYVDDIIVATPQGADIEGVKKELLGLFKGTDLGPVHHVLGIRVTRDRKAGTIHLDQERYADEVLERFGMD 826          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177TYW9_9BASI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177TYW9_9BASI)

HSP 1 Score: 176 bits (445), Expect = 2.870e-46
Identity = 94/265 (35.47%), Postives = 150/265 (56.60%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
            +P T+GEA A  +WP+W  A+ +E+    + G W++V+ P+G  ++ ++ V + K + D  I+KYK  LVA+GF Q+ G+ Y+E  +PT     +R+   + AAL  E+ Q+D + AYL  K+K +IY+E+PE       +V  L+  +YGL  +   W       L++ GF + + DP ++ R   G    ++ VYVDD++VA+    D E   ++L   F   DLG   + LG  +TRDR AGT+  DQ +Y   + ERF  D
Sbjct:  874 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMEVPEGVEALPDEVLKLRLALYGLKQSGHDWHAALRDALDSIGFLQCEFDPTIFVR--DGERTAMLLVYVDDIIVATPQGADIEGVKKELLGLFKGTDLGPVHHVLGIRVTRDRKAGTIHLDQERYADEVLERFGMD 1136          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 173 bits (439), Expect = 1.850e-45
Identity = 104/264 (39.39%), Postives = 146/264 (55.30%), Query Frame = 1
Query:    4 LDSEPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAER 795
            LD EP T  EA +  +   WK A A E+       ++  VE+P+G+ V+G + VFK K   DG IEKYK  LVA+GF QV+GI Y +  +P     SIR VL + A    +V Q+DV  A+L   + EEIY+  P  +      V  L+K +YGL  A   W K    E E  GF+RS AD  ++ ++ +GV+++ IA+YVDD+L+A   +   +     L   F + DLG A + LG  I RDR   TL+  Q QYI+ + ER
Sbjct:  985 LDGEPLTYEEAMSRPDADMWKAACAEELFAFAKAELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENGVILI-IALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILER 1247          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177TFY1_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TFY1_9BASI)

HSP 1 Score: 172 bits (436), Expect = 2.610e-45
Identity = 97/263 (36.88%), Postives = 146/263 (55.51%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVV-VVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 798
            EP T+GEA++ SEW +WK A+  E D       W  V R K K ++ +R V+K K+D+ GR  +YK  LVA G  Q  GI Y E  SP     S+R++L + A  GW V QLDV  AYL   + +E+Y++ P  + D    V  LK+ +YGL  +   W +     L   GF +  ++PC++ R  +    +VV+AVYV+D+L+ + ++ + EQ    L   F +K+ G   ++LG H+ RD  AGT+T  Q  Y   M +R+
Sbjct:  517 EPKTLGEAKSRSEWGKWKDAMQEEYDSLVKKKTWVKVSRRKAKRLIRSRWVYKLKLDELGRAMRYKARLVAMGNTQRAGIDYGETFSPVARMASLRILLVLAAKFGWIVEQLDVVTAYLNGILHDEVYMQQPPGFEDGTDDVLQLKRALYGLKQSGREWNEVLVAALTKAGFAQLDSEPCIFVRNRNDWKRMVVLAVYVNDILIFTPSRSECEQVKTFLREEFEMKENGAVHHFLGVHVQRDEAAGTITLSQQAYANAMLQRY 779          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI)

HSP 1 Score: 172 bits (435), Expect = 6.100e-45
Identity = 89/250 (35.60%), Postives = 145/250 (58.00%), Query Frame = 1
Query:   49 EWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 798
            EW  WK A+  E+    +   W++VE PKG+ V+G+R V+K K+D+DGR  +YK  LVAQGF Q  GI + +  +P     +IR+++ +  AL   +  +D+  AYL  K++EE+Y++ P  Y D   +V LL++ +YGL  A   W  T   +L + G+ + Q++PC++ R       V++AVYVDD+++A+  K   +Q  ++  S F I D GE  + LG  I  D +  T T  Q  YI+++  ++
Sbjct:  704 EWRHWKEAMDEEIGSLVEMKTWELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLLSAGYTQIQSEPCLFVR-FGDAGPVILAVYVDDIVIAARGKEGVDQVKKEFASWFKITDNGELSHILGMRIDYDASKRTATLTQTAYIESLLRKY 952          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A284QR88_ARMOS6.920e-5239.25Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A177U2Z9_9BASI3.470e-4836.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C3AKI0_9AGAM9.690e-4836.40Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A8J4LUU8_9CHLO1.570e-4638.20Integrase catalytic domain-containing protein n=2 ... [more]
A0A177T1Q9_9BASI2.670e-4635.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U7F2_9BASI2.690e-4635.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A177TYW9_9BASI2.870e-4635.47Integrase catalytic domain-containing protein (Fra... [more]
A0A1M2VV58_TRAPU1.850e-4539.39Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TFY1_9BASI2.610e-4536.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A177TV96_9BASI6.100e-4535.60Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123678contigH-elongata_contig123678:102..908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size807
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123678.1784.1prot_H-elongata_contig123678.1784.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123678 417..608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929728.0723002-UTR-H-elongata_contig123678:101..4161622929728.0723002-UTR-H-elongata_contig123678:101..416Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123678 102..416 -
1691679135.1020534-UTR-H-elongata_contig123678:101..4161691679135.1020534-UTR-H-elongata_contig123678:101..416Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123678 102..416 -
1622929728.1064482-UTR-H-elongata_contig123678:608..9081622929728.1064482-UTR-H-elongata_contig123678:608..908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123678 609..908 -
1691679135.12538-UTR-H-elongata_contig123678:608..9081691679135.12538-UTR-H-elongata_contig123678:608..908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123678 609..908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929728.087258-CDS-H-elongata_contig123678:416..6081622929728.087258-CDS-H-elongata_contig123678:416..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123678 417..608 -
1691679135.1115742-CDS-H-elongata_contig123678:416..6081691679135.1115742-CDS-H-elongata_contig123678:416..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123678 417..608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123678.1784.1

>prot_H-elongata_contig123678.1784.1 ID=prot_H-elongata_contig123678.1784.1|Name=mRNA_H-elongata_contig123678.1784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLK
KVMYGLVHAELLW*
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mRNA from alignment at H-elongata_contig123678:102..908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123678.1784.1 ID=mRNA_H-elongata_contig123678.1784.1|Name=mRNA_H-elongata_contig123678.1784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=807bp|location=Sequence derived from alignment at H-elongata_contig123678:102..908- (Himanthalia elongata Himel1 dioecious)
CATCTAGACTCAGAGCCGACAACGATGGGCGAGGCGCAAGCGTCGTCGGA GTGGCCACAATGGAAAAGGGCGATCGCGCGCGAGGTGGATGGGCAAACTG ATTGAGGCGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTG GGCACGAGAGTAGTTTTCAAGTGCAAAATCGACAAGGATGGAAGAATCGA GAAGTATAAATGTCACCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCA TACACTACGAGGAATACTCCTCTCCGACTCCTGCGCAGGTCAGCATTAGA ATGGTATTGGGCATGATCGCGGCTCTCGGCTGGGAGGTGCGGCAGCTGGA CGTCGACATGGCCTACCTGGAGGTCAAAGTGAAGGAGGAGATCTACGTTG AGCTCCCGGAGGCATACCGTGACTCCAGGAAGCAAGTCAGCCTGCTAAAG AAGGTAATGTACGGACTCGTCCACGCCGAGCTGCTGTGGTAAAAAACATT CGGGATCGAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGACCCAT GCGTGTACCGGCGGATTCTCCACGGGGTAGTTGTAGTCGTTATTGCGGTC TACGTCGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCA AGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATCAAGGATCTGGGCGAGG CTTTGTATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACA CTGACGTTCGACCAGCATCAGTACATACAGACTATGGCAGAACGTTTTTG GCGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig123678:102..908-

>mRNA_H-elongata_contig123678.1784.1 ID=mRNA_H-elongata_contig123678.1784.1|Name=mRNA_H-elongata_contig123678.1784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig123678:102..908- (Himanthalia elongata Himel1 dioecious)
ATGGTATTGGGCATGATCGCGGCTCTCGGCTGGGAGGTGCGGCAGCTGGA
CGTCGACATGGCCTACCTGGAGGTCAAAGTGAAGGAGGAGATCTACGTTG
AGCTCCCGGAGGCATACCGTGACTCCAGGAAGCAAGTCAGCCTGCTAAAG
AAGGTAATGTACGGACTCGTCCACGCCGAGCTGCTGTGGTAAATGGTATT
GGGCATGATCGCGGCTCTCGGCTGGGAGGTGCGGCAGCTGGACGTCGACA
TGGCCTACCTGGAGGTCAAAGTGAAGGAGGAGATCTACGTTGAGCTCCCG
GAGGCATACCGTGACTCCAGGAAGCAAGTCAGCCTGCTAAAGAAGGTAAT
GTACGGACTCGTCCACGCCGAGCTGCTGTGGTAA
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