mRNA_H-elongata_contig123678.1784.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 192 bits (487), Expect = 6.920e-52 Identity = 104/265 (39.25%), Postives = 156/265 (58.87%), Query Frame = 1
Query: 4 LDSEPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 798
+D+ P ++ EA+AS EW +WK+A+ E+ + G + + P G+ +G + VF K D+DG I +YK LVAQG+ Q+ G+ Y E +P S+R LG+ A E+ Q+DV AYL +++EEIY+ PE Y D +V L+K +YGL + W + F +L + GF + +AD CVY+RI G + + I V+VDDLL+ S T D + +L + F +KDLGE +G I RDR GT++ Q QYI+ + RF
Sbjct: 875 IDNFPRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRF 1138
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177U2Z9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia walkeri TaxID=117179 RepID=A0A177U2Z9_9BASI) HSP 1 Score: 177 bits (448), Expect = 3.470e-48 Identity = 96/265 (36.23%), Postives = 152/265 (57.36%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
+P T+GEA A ++WP+W A+ +E+ + G W+VV P+G ++ ++ V + K + D I+KYK LVA+GF QV+G+ Y+E +PT +R+ + AAL ++ Q+D + AYL K+K +IY+E+PE + L+ +YGL + W L + GFQ+ ++DP ++ R G + VYVDD++VA+ D E R+L S F DLG + LG ITRDRNAG++ Q +Y + + +RF D
Sbjct: 37 DPRTVGEAMARTDWPKWHAAMLKELKSHEERGTWEVVRAPEGANLVTSKWVLRIKRNADATIQKYKGRLVARGFTQVQGVDYDETFAPTSRLQILRLFSALSAALDMKLHQIDFETAYLNAKLKHDIYMEVPEGVDALPDEALKLRLALYGLKQSGHDWHAALRDALASIGFQQCESDPTIFVR--DGKRAAMPLVYVDDIIVATPQGEDIEAVKRELLSLFKGTDLGPVHHVLGIRITRDRNAGSIHLHQERYAEEVLDRFGMD 299
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 180 bits (456), Expect = 9.690e-48 Identity = 95/261 (36.40%), Postives = 146/261 (55.94%), Query Frame = 1
Query: 16 PTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 798
P T+ +A+ S EW W+ A+ E G W++ E + + ++G+R VF K D+ G++ +YK LVAQGF Q+ G+ Y + SP ++R + + A WE+RQ+D+ AYL +++EEI++E PE + D +V LK +YGL A +W K +L GF R+ ADPCVY G + + + V+VDD+++ ++ + V L F +KDLGE LG I R+R T+T Q YI T+ ERF
Sbjct: 855 PKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITI-LTVWVDDIILCGDSESRIDTTVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILERF 1114
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A8J4LUU8_9CHLO (Integrase catalytic domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LUU8_9CHLO) HSP 1 Score: 176 bits (447), Expect = 1.570e-46 Identity = 102/267 (38.20%), Postives = 150/267 (56.18%), Query Frame = 1
Query: 10 SEPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSL-LKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
SEP T+ EAQA S+WP WK A+ E+ + W + E PK +G + VFK K D +G IE+YK LVA+GF Q +G+ + E +P S+R +L ++AA E+ QLD+ A+L ++EE++ E P Y V+ L++ +YGL A W LE GF+ S ADP ++ + G V I VYVDDLL+A + E+ L S F ++DLGE+ +YLG I RDR+A TL Q ++++ + +F D
Sbjct: 960 SEPNTLAEAQARSDWPHWKAAMDEEMKSLLENRTWDLEELPKSAKKIGLKWVFKLKRDANGNIERYKARLVAKGFTQKEGVDFGEVFAPVGKYTSLRALLAVVAAQNLELHQLDIKTAFLNGVLEEEVFTEQPAGYEQGGANVACHLRRALYGLRQAPRTWYVRLRSTLEQMGFKPSSADPGLFIK-GEGENRVHILVYVDDLLIACNSCAIAEEIKSQLRSVFEMRDLGESNFYLGFEIRRDRSAKTLHISQKRFVKELLSKFGMD 1225
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177T1Q9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Tilletia TaxID=13289 RepID=A0A177T1Q9_9BASI) HSP 1 Score: 174 bits (441), Expect = 2.670e-46 Identity = 94/265 (35.47%), Postives = 150/265 (56.60%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
+P T+GEA A +WP+W A+ +E+ + G W++V+ P+G ++ ++ V + K + D I+KYK LVA+GF Q+ G+ Y+E +PT +R+ + AAL E+ Q+D + AYL K+K +IY+ +PE +V L+ +YGL + W L + GFQ+ + DP ++ R +G ++ VYVDD++VA+ D E R+L F DLG + LG +TRD AGT+ DQ +Y + + ERF D
Sbjct: 203 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMAVPEGVEALPDEVLKLRLALYGLKQSGHDWHVALRDALGSIGFQQCEFDPTIFVR--NGERAAMLLVYVDDIIVATPQGEDIEGVKRELLGLFKGTDLGPVHHVLGIRVTRDCKAGTIHLDQERYAEEVLERFGMD 465
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177U7F2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U7F2_9BASI) HSP 1 Score: 176 bits (445), Expect = 2.690e-46 Identity = 94/265 (35.47%), Postives = 150/265 (56.60%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
+P T+GEA A +WP+W A+ +E+ + G W++V+ P+G ++ ++ V + K + D I+KYK LVA+GF Q+ G+ Y+E +PT +R+ + AAL E+ Q+D + AYL K+K +IY+E+PE +V L+ +YGL + W L++ GF + + DP ++ R G ++ VYVDD++VA+ D E ++L F DLG + LG +TRDR AGT+ DQ +Y + ERF D
Sbjct: 564 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMEVPEGVEALPDEVLKLRLALYGLKQSGHDWHAALRDALDSIGFLQCEFDPTIFVR--DGERTAMLLVYVDDIIVATPQGADIEGVKKELLGLFKGTDLGPVHHVLGIRVTRDRKAGTIHLDQERYADEVLERFGMD 826
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177TYW9_9BASI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177TYW9_9BASI) HSP 1 Score: 176 bits (445), Expect = 2.870e-46 Identity = 94/265 (35.47%), Postives = 150/265 (56.60%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERFWRD 807
+P T+GEA A +WP+W A+ +E+ + G W++V+ P+G ++ ++ V + K + D I+KYK LVA+GF Q+ G+ Y+E +PT +R+ + AAL E+ Q+D + AYL K+K +IY+E+PE +V L+ +YGL + W L++ GF + + DP ++ R G ++ VYVDD++VA+ D E ++L F DLG + LG +TRDR AGT+ DQ +Y + ERF D
Sbjct: 874 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMEVPEGVEALPDEVLKLRLALYGLKQSGHDWHAALRDALDSIGFLQCEFDPTIFVR--DGERTAMLLVYVDDIIVATPQGADIEGVKKELLGLFKGTDLGPVHHVLGIRVTRDRKAGTIHLDQERYADEVLERFGMD 1136
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU) HSP 1 Score: 173 bits (439), Expect = 1.850e-45 Identity = 104/264 (39.39%), Postives = 146/264 (55.30%), Query Frame = 1
Query: 4 LDSEPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAER 795
LD EP T EA + + WK A A E+ ++ VE+P+G+ V+G + VFK K DG IEKYK LVA+GF QV+GI Y + +P SIR VL + A +V Q+DV A+L + EEIY+ P + V L+K +YGL A W K E E GF+RS AD ++ ++ +GV+++ IA+YVDD+L+A + + L F + DLG A + LG I RDR TL+ Q QYI+ + ER
Sbjct: 985 LDGEPLTYEEAMSRPDADMWKAACAEELFAFAKAELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENGVILI-IALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILER 1247
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177TFY1_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TFY1_9BASI) HSP 1 Score: 172 bits (436), Expect = 2.610e-45 Identity = 97/263 (36.88%), Postives = 146/263 (55.51%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVV-VVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 798
EP T+GEA++ SEW +WK A+ E D W V R K K ++ +R V+K K+D+ GR +YK LVA G Q GI Y E SP S+R++L + A GW V QLDV AYL + +E+Y++ P + D V LK+ +YGL + W + L GF + ++PC++ R + +VV+AVYV+D+L+ + ++ + EQ L F +K+ G ++LG H+ RD AGT+T Q Y M +R+
Sbjct: 517 EPKTLGEAKSRSEWGKWKDAMQEEYDSLVKKKTWVKVSRRKAKRLIRSRWVYKLKLDELGRAMRYKARLVAMGNTQRAGIDYGETFSPVARMASLRILLVLAAKFGWIVEQLDVVTAYLNGILHDEVYMQQPPGFEDGTDDVLQLKRALYGLKQSGREWNEVLVAALTKAGFAQLDSEPCIFVRNRNDWKRMVVLAVYVNDILIFTPSRSECEQVKTFLREEFEMKENGAVHHFLGVHVQRDEAAGTITLSQQAYANAMLQRY 779
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI) HSP 1 Score: 172 bits (435), Expect = 6.100e-45 Identity = 89/250 (35.60%), Postives = 145/250 (58.00%), Query Frame = 1
Query: 49 EWPQWKRAIAREVDGQTD*GVWQVVERPKGKTVLGTRVVFKCKIDKDGRIEKYKCHLVAQGFRQVKGIHYEEYSSPTPAQVSIRMVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW*KTFGIELEAKGFQRSQADPCVYRRILHGVVVVVIAVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 798
EW WK A+ E+ + W++VE PKG+ V+G+R V+K K+D+DGR +YK LVAQGF Q GI + + +P +IR+++ + AL + +D+ AYL K++EE+Y++ P Y D +V LL++ +YGL A W T +L + G+ + Q++PC++ R V++AVYVDD+++A+ K +Q ++ S F I D GE + LG I D + T T Q YI+++ ++
Sbjct: 704 EWRHWKEAMDEEIGSLVEMKTWELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLLSAGYTQIQSEPCLFVR-FGDAGPVILAVYVDDIVIAARGKEGVDQVKKEFASWFKITDNGELSHILGMRIDYDASKRTATLTQTAYIESLLRKY 952 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig123678.1784.1 >prot_H-elongata_contig123678.1784.1 ID=prot_H-elongata_contig123678.1784.1|Name=mRNA_H-elongata_contig123678.1784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp MVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKback to top mRNA from alignment at H-elongata_contig123678:102..908- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig123678.1784.1 ID=mRNA_H-elongata_contig123678.1784.1|Name=mRNA_H-elongata_contig123678.1784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=807bp|location=Sequence derived from alignment at H-elongata_contig123678:102..908- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig123678:102..908- >mRNA_H-elongata_contig123678.1784.1 ID=mRNA_H-elongata_contig123678.1784.1|Name=mRNA_H-elongata_contig123678.1784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig123678:102..908- (Himanthalia elongata Himel1 dioecious)back to top |