mRNA_H-elongata_contig123636.1783.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: D7FLP3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP3_ECTSI) HSP 1 Score: 287 bits (735), Expect = 9.160e-86 Identity = 174/271 (64.21%), Postives = 194/271 (71.59%), Query Frame = 1
Query: 1 EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAADAAILASGQGNIAREGERKGKGDEAPR---TSRRKSSSSKPRSTAK----GYADPDADSGFGP-PAP-SVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVA---IQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
EVFR+VGRQYRH+LVDEWQDTNGPQY +VLE+VRAG EAQ A E+ RAA AA +G I R GE G +P S +S TA G + A G P PAP S+FVVGD+DQCIY+FRGAD+TNVARF EDF CRTV LRENYRST NIARAATAVI +V R Q T+A +Q DG PIGVM CSD GEA+AVA +ELY TSGRV EMAVMYRTNAQSRSFEEA +R+ALPFVVVGAQRFYERREV D
Sbjct: 303 EVFRSVGRQYRHILVDEWQDTNGPQYDIVLEIVRAGREAQQAREDNRRAAQAAREGGSRG-IERGGEAGGPAYSSPAGLGDSGSPASGGAEAETASAKVVGVSGEGAAGGTRPQPAPPSIFVVGDTDQCIYKFRGADYTNVARFVEDFKACRTVMLRENYRSTANIARAATAVIGQVSGRAGQSTIATTAVQGDGLPIGVMVCSDAAGEAEAVAHHLELYWTSGRVQPSEMAVMYRTNAQSRSFEEACLRKALPFVVVGAQRFYERREVKD 572
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: A0A199NUU3_9MICC (DNA helicase n=11 Tax=Actinomycetia TaxID=1760 RepID=A0A199NUU3_9MICC) HSP 1 Score: 148 bits (374), Expect = 8.760e-37 Identity = 101/259 (39.00%), Postives = 131/259 (50.58%), Query Frame = 1
Query: 1 EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAADAAILASGQGNIAREGERKGKGDEAPRTSRRKSSSSKPRSTAKGYADPDADSGFGPPAPSVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVAIQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
+V R+YRH+LVDE+QDTN QY LV ELV A DAA + G N A G+ + P A G A+ + VVGDSDQ IY FRGAD N+ F D+ RT+ L +NYRST I AA AVIE+ QR ++ DG PI ++ EA+ +A +++ + AG++AV YRTNAQSRS EE +R LP+ VVG RFYER+E+ D
Sbjct: 232 QVAEFYRRRYRHILVDEYQDTNHAQYALVRELVGA---------------DAAASSGGSSNGAVAGK------------------ASPYPEAAGPAE-------------LTVVGDSDQSIYAFRGADIRNITDFERDYPNARTILLEQNYRSTQTILSAANAVIERNPQRRPKKLWTASGDGEPIVGYVAENEHAEARFIAEEIDRLRDEECIAAGDVAVFYRTNAQSRSLEEILMRVGLPYRVVGGTRFYERKEIKD 444
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: A0A7W1V1U4_9ACTN (ATP-dependent DNA helicase n=1 Tax=Propionibacteriales bacterium TaxID=2015801 RepID=A0A7W1V1U4_9ACTN) HSP 1 Score: 147 bits (371), Expect = 2.010e-36 Identity = 102/259 (39.38%), Postives = 127/259 (49.03%), Query Frame = 1
Query: 1 EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAADAAILASGQGNIAREGERKGKGDEAPRTSRRKSSSSKPRSTAKGYADPDADSGFGPPAPSVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVAIQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
EV R++RHVLVDE+QDTN QY LV EL AG R AD ++ G +P A S PA + VVGDSDQ IY FRGA+ N+ +F EDF G TV L +NYRST NI AA AVI +R + + DG I D+ EA+ VA +++ + ++A+ YRTNAQSR FEE F+R LP+ VVG RFYERREV D
Sbjct: 231 EVRETYRRRFRHVLVDEYQDTNHAQYVLVRELCAAGAG--------RRTADGDVV--------------------------------------GSTEPAAASHAAEPA-ELLVVGDSDQSIYAFRGANIRNILQFEEDFPGASTVVLEQNYRSTQNILNAANAVISNNPKRRPKNLWSEAGDGELIAGYVADDEHDEAQFVAEEIDRLTDASEAKPADVAIFYRTNAQSRVFEEVFIRVGLPYKVVGGVRFYERREVRD 442
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: A0A6G7XLL3_9ACTN (ATP-dependent DNA helicase n=1 Tax=Nocardioides sp. HDW12B TaxID=2714939 RepID=A0A6G7XLL3_9ACTN) HSP 1 Score: 145 bits (366), Expect = 9.930e-36 Identity = 99/259 (38.22%), Postives = 128/259 (49.42%), Query Frame = 1
Query: 1 EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAADAAILASGQGNIAREGERKGKGDEAPRTSRRKSSSSKPRSTAKGYADPDADSGFGPPAPSVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVAIQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
EV R++RHVLVDE+QDTN QY LV EL V AAL + A A G+G + GP + VVGD+DQ IY FRGA+ N+ F EDFA RT+ L +NYRST + AA AVI + + R + + G PI D+ EA+ +AR+++ GR ++AV YRTNAQSR FEE F+R +P+ VVG RFYER+EV D
Sbjct: 255 EVRETYRRRFRHVLVDEYQDTNHAQYALVRELCGTSVRRPAALGGDDPDLPDADEAEGEGGV------------------------------------------GP--AELMVVGDADQSIYAFRGANIRNIMAFEEDFADARTILLEQNYRSTQTVLDAANAVIGRNKGRKPKRLWSDTGTGDPIVGYVADDEHDEARFIAREIDTLGDEGRAKPKDVAVFYRTNAQSRVFEEVFIRVGMPYKVVGGVRFYERKEVRD 469
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: A0A7X7XJR7_9ACTN (DNA helicase n=1 Tax=Propionibacterium sp. TaxID=1977903 RepID=A0A7X7XJR7_9ACTN) HSP 1 Score: 144 bits (364), Expect = 1.860e-35 Identity = 99/259 (38.22%), Postives = 124/259 (47.88%), Query Frame = 1
Query: 1 EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAADAAILASGQGNIAREGERKGKGDEAPRTSRRKSSSSKPRSTAKGYADPDADSGFGPPAPSVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVAIQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
+V R++RHVLVDE+QDTN QY LV EL G G +AP A+P P + VVGDSDQ IY FRGAD N+ F DF G RT+ L +NYRST I AA AVI + R ++ + DG PI + EA+ VA +++ +G G++AV YRTNAQSR+FEE F+R LP+ VVG RFYERREV D
Sbjct: 264 DVRERYRRRFRHVLVDEYQDTNHAQYALVRELC------------------------------------GPGSDAP---------------GAPVAEP----------PELMVVGDSDQSIYAFRGADIRNILDFESDFPGARTILLEQNYRSTQTILSAANAVITRNANRPEKRLWSDAGDGEPIVGYVADTEHAEAQFVATEIDRLTDAGTARPGDVAVFYRTNAQSRAFEEVFIRVGLPYRVVGGVRFYERREVRD 461
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: UPI001FCBECA1 (DNA helicase PcrA n=2 Tax=Kineococcus TaxID=33981 RepID=UPI001FCBECA1) HSP 1 Score: 143 bits (361), Expect = 4.330e-35 Identity = 98/259 (37.84%), Postives = 125/259 (48.26%), Query Frame = 1
Query: 1 EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAADAAILASGQGNIAREGERKGKGDEAPRTSRRKSSSSKPRSTAKGYADPDADSGFGPPAPSVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVAIQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
+V R++RHVLVDE+QDTN QY LV ELV V +AA L + G++ REG R P + VVGD+DQ IY FRGA N+A F +D+ RTV L +NYRST I AA VI+ R + G I D+ EA VA +V+ +G++ ++AV YRTNAQSR+ EE FVR LP+ +VG RFYERREV D
Sbjct: 234 DVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGGSVSEEAARSG---------LTAADGSVVREGSR-----------------------------------IAVPPAELTVVGDADQSIYAFRGATIRNIAEFEKDYPDARTVLLEQNYRSTQTILSAANEVIKHNEDRRAKNLWTAAGAGEQIVGYVADDEHDEAAFVAEEVDRLHDAGQLKYSDVAVFYRTNAQSRALEEVFVRTGLPYKIVGGTRFYERREVKD 448
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: A0A497AZB6_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497AZB6_9CHLR) HSP 1 Score: 142 bits (359), Expect = 6.460e-35 Identity = 73/150 (48.67%), Postives = 97/150 (64.67%), Query Frame = 1
Query: 328 SVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVAIQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
++FVVGD DQ IYRFRGAD NV RF EDF R + L +NYRST I AA ++I + R ++ + G PI V D+V E++ V +++ + G G+ AVMYRTNAQSR+ EEAF+RR +P+ +VGA RFYERRE+ D
Sbjct: 238 NIFVVGDEDQSIYRFRGADWRNVLRFKEDFPEARVILLEKNYRSTQTILDAAQSIISRNPHRTPKKLYTDKGQGLPIIVFEAYDEVEESEFVVGEIQRLIARGLYSPGDFAVMYRTNAQSRTLEEAFLRRGMPYQLVGATRFYERREIKD 387
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: A0A7V9QZ44_9ACTN (ATP-dependent DNA helicase n=2 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A7V9QZ44_9ACTN) HSP 1 Score: 142 bits (358), Expect = 1.140e-34 Identity = 101/259 (39.00%), Postives = 131/259 (50.58%), Query Frame = 1
Query: 1 EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAADAAILASGQGNIAREGERKGKGDEAPRTSRRKSSSSKPRSTAKGYADPDADSGFGPPAPSVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVAIQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
EV R++RHVLVDE+QDTN QY L+ EL +D + + G++ G P ST+ P A+ PA + VVGDSDQ IY FRGA+ N+ +F +DFAG TV L +NYRST NI AA AVI +R + + DG I D+ EA+ VA +++ G ++AV YRTNAQSR FEE F+R LP+ VVG RFYERRE+ D
Sbjct: 237 EVRETYRRRFRHVLVDEYQDTNHAQYALIRELC----------------SDTSARRTSDGDLVGVG---------------------PTSTSARPETPAAE-----PA-ELMVVGDSDQSIYAFRGANIRNILQFEQDFAGASTVVLDQNYRSTQNILSAANAVIANNPKRRPKNLWSEAGDGELICGYVADDEHDEAQFVAEEIDRLTDDGIAKPSDVAVFYRTNAQSRVFEEVFIRVGLPYKVVGGVRFYERREIRD 452
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: A0A2W5D0Q3_9ACTN (DNA helicase (Fragment) n=1 Tax=Cutibacterium granulosum TaxID=33011 RepID=A0A2W5D0Q3_9ACTN) HSP 1 Score: 139 bits (349), Expect = 1.150e-34 Identity = 98/259 (37.84%), Postives = 124/259 (47.88%), Query Frame = 1
Query: 1 EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAADAAILASGQGNIAREGERKGKGDEAPRTSRRKSSSSKPRSTAKGYADPDADSGFGPPAPSVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVAIQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
EV R++RHVLVDE+QDTN QYQ++ L AD ASG AR R A P + VVGDSDQ IY FRGA N+ F +DF G RT+ L +NYRST NI AA ++I+K R + Q DG I + EA +A +++ + GR GE+AV YRTNAQSR+ E+ F+R LP+ VVG RFYER+EV D
Sbjct: 220 EVREHYRRRFRHVLVDEYQDTNTAQYQMIRALC----------------ADEPEHASGSEEDAR------------------------RHVAP---------------PELMVVGDSDQSIYAFRGATIRNILDFEKDFPGARTILLEQNYRSTQNILAAANSLIQKNTGRPAKNLWTDQGDGAAITGYVADTEHDEASWIAGRIDDLVDQGRTSYGEVAVFYRTNAQSRALEDVFIRTGLPYRVVGGVRFYERKEVRD 423
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Match: A0A2G6HBA0_9ACTO (ATP-dependent DNA helicase n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A2G6HBA0_9ACTO) HSP 1 Score: 142 bits (358), Expect = 1.170e-34 Identity = 103/259 (39.77%), Postives = 130/259 (50.19%), Query Frame = 1
Query: 1 EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAADAAILASGQGNIAREGERKGKGDEAPRTSRRKSSSSKPRSTAKGYADPDADSGFGPPAPSVFVVGDSDQCIYRFRGADHTNVARFAEDFAGCRTVFLRENYRSTGNIARAATAVIEKVRQRIKQETVAIQSDGRPIGVMRCSDDVGEAKAVARQVELYLTSGRVPAGEMAVMYRTNAQSRSFEEAFVRRALPFVVVGAQRFYERREVDD 777
EV R++RHVLVDE+QDTN QY LV ELV +A AAD +A+ +ARE G A P A PPA V VVGD+DQ IY FRGA N+ F +D+ T+ L +NYRST I RAA AVI R + + Q DG PI ++ EA V R+++ V ++AV YRTNAQSR+ EE FVR +P+ VVG RFYER+E+ D
Sbjct: 253 EVAEHYRRRFRHVLVDEYQDTNHAQYCLVRELVGVSDDA---------AADPRAMANASDLVARE-------------------------HPAGAAGPAA----YPPAELV-VVGDADQSIYAFRGASIRNIVEFEQDYPHASTILLEQNYRSTQTILRAANAVIAHNPDRRPKNLWSDQGDGAPIVGYVADNEHDEASFVGRRIDTLADDHGVRPQDIAVFYRTNAQSRALEEVFVRVGIPYKVVGGTRFYERKEIKD 472 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123636.1783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig123636.1783.1 >prot_H-elongata_contig123636.1783.1 ID=prot_H-elongata_contig123636.1783.1|Name=mRNA_H-elongata_contig123636.1783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp EVFRAVGRQYRHVLVDEWQDTNGPQYQLVLELVRAGVEAQAALEEIERAAback to top mRNA from alignment at H-elongata_contig123636:527..1771+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig123636.1783.1 ID=mRNA_H-elongata_contig123636.1783.1|Name=mRNA_H-elongata_contig123636.1783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1245bp|location=Sequence derived from alignment at H-elongata_contig123636:527..1771+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig123636:527..1771+ >mRNA_H-elongata_contig123636.1783.1 ID=mRNA_H-elongata_contig123636.1783.1|Name=mRNA_H-elongata_contig123636.1783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig123636:527..1771+ (Himanthalia elongata Himel1 dioecious)back to top |