mRNA_H-elongata_contig123625.1781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig123625.1781.1
Unique Name	mRNA_H-elongata_contig123625.1781.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.030e-29
Identity = 57/101 (56.44%), Postives = 66/101 (65.35%), Query Frame = 2

Query:  128 GVAEFHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGKACIRFGSRL------VWV 412
            GV E++FEVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV  FM+ KGW  IWTPPYMPSFQPIE FW+HGK  +     L      VWV
Sbjct:  149 GVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWV 249

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BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5KEG4_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.290e-29
Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 2

Query:  128 GVAEFHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGK 376
            GV E++FEVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV   M+ KGW  IWTPPYMPSFQPIE FW+HGK
Sbjct:  102 GVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTLMRKKGWALIWTPPYMPSFQPIELFWQHGK 184

[Close]

BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.150e-28
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  131 VAEFHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGKACIRFGSRLVWVGGGSRPFV 436
            V E++FEVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV  FM+ KGW  IWTPPYMPSFQPIE FW+HGK     G     V   +R  +
Sbjct:   69 VVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQXREGGVSRAEVATATREHI 170

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BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.750e-28
Identity = 57/101 (56.44%), Postives = 66/101 (65.35%), Query Frame = 2

Query:  128 GVAEFHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGKACIRFGSRL------VWV 412
            GV E++FEVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV  FM+ KGW  IWTPPYMPSFQPIE FW+HGK  +     L      VWV
Sbjct:  446 GVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWV 546

[Close]

BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.860e-28
Identity = 57/101 (56.44%), Postives = 66/101 (65.35%), Query Frame = 2

Query:  128 GVAEFHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGKACIRFGSRL------VWV 412
            GV E++FEVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV  FM+ KGW  IWTPPYMPSFQPIE FW+HGK  +     L      VWV
Sbjct:  456 GVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWV 556

[Close]

BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.550e-27
Identity = 56/101 (55.45%), Postives = 65/101 (64.36%), Query Frame = 2

Query:  128 GVAEFHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGKACIRFGSRL------VWV 412
            GV E++ EVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV  FM+ KGW  IWTPPYMPSFQPIE FW+HGK  +     L      VWV
Sbjct:  345 GVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWV 445

[Close]

BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.870e-27
Identity = 56/101 (55.45%), Postives = 65/101 (64.36%), Query Frame = 2

Query:  128 GVAEFHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGKACIRFGSRL------VWV 412
            GV E++ EVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV  FM+ KGW  IWTPPYMPSFQPIE FW+HGK  +     L      VWV
Sbjct:  329 GVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWV 429

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BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5KRM6_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRM6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.890e-27
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 2

Query:  128 GVAEFHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGKACI 385
            G  E++FEVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV  FM+ KGW  IWTPPYMPSFQPIE FW+HGK  +
Sbjct:  388 GSVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYV 473

[Close]

BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.540e-27
Identity = 54/97 (55.67%), Postives = 63/97 (64.95%), Query Frame = 2

Query:  140 FHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGKACIRFGSRL------VWV 412
            ++FEVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV  FM+ KGW  IWTPPYMPSFQPIE FW+HGK  +     L      VWV
Sbjct:  231 YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWV 327

[Close]

BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 6.330e-27
Identity = 54/97 (55.67%), Postives = 63/97 (64.95%), Query Frame = 2

Query:  140 FHFEVP*EPGSKFPGARSAGGVSKEEDAIPTRVYLKLHHPTKLVERVEAFMKSKGWEWIWTPPYMPSFQPIEQFWEHGKACIRFGSRL------VWV 412
            ++FEVP EPGS FP     GGVS+ E A  TR Y+ L+HP +L ERV  FM+ KGW  IWTPPYMPSFQPIE FW+HGK  +     L      VWV
Sbjct:  178 YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWV 274

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot

BLAST of mRNA_H-elongata_contig123625.1781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KF39_9PHAE	2.030e-29	56.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEG4_9PHAE	2.290e-29	62.65	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JZ92_9PHAE	2.150e-28	53.92	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KIM5_9PHAE	3.750e-28	56.44	DDE_3 domain-containing protein n=4 Tax=Ectocarpus...	[more]
A0A6H5JR41_9PHAE	3.860e-28	56.44	DDE_3 domain-containing protein n=5 Tax=Ectocarpus...	[more]
A0A6H5K024_9PHAE	1.550e-27	55.45	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KDX7_9PHAE	1.870e-27	55.45	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KRM6_9PHAE	2.890e-27	60.47	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KUM1_9PHAE	3.540e-27	55.67	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KHE7_9PHAE	6.330e-27	55.67	DDE_3 domain-containing protein n=2 Tax=Ectocarpus...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig123625	contig	H-elongata_contig123625:365..1109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	745
Cds size	180
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig123625.1781.1	prot_H-elongata_contig123625.1781.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig123625 654..833 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929727.811541-UTR-H-elongata_contig123625:364..653	1622929727.811541-UTR-H-elongata_contig123625:364..653	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig123625 365..653 +
1691679135.0147703-UTR-H-elongata_contig123625:364..653	1691679135.0147703-UTR-H-elongata_contig123625:364..653	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig123625 365..653 +
1622929727.8558671-UTR-H-elongata_contig123625:833..1109	1622929727.8558671-UTR-H-elongata_contig123625:833..1109	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig123625 834..1109 +
1691679135.0336583-UTR-H-elongata_contig123625:833..1109	1691679135.0336583-UTR-H-elongata_contig123625:833..1109	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig123625 834..1109 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929727.8329673-CDS-H-elongata_contig123625:653..833	1622929727.8329673-CDS-H-elongata_contig123625:653..833	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig123625 654..833 +
1691679135.0233493-CDS-H-elongata_contig123625:653..833	1691679135.0233493-CDS-H-elongata_contig123625:653..833	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig123625 654..833 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig123625:365..1109+
coding sequence from alignment at H-elongata_contig123625:365..1109+

protein sequence of mRNA_H-elongata_contig123625.1781.1

>prot_H-elongata_contig123625.1781.1 ID=prot_H-elongata_contig123625.1781.1|Name=mRNA_H-elongata_contig123625.1781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MKSKGWEWIWTPPYMPSFQPIEQFWEHGKACIRFGSRLVWVGGGSRPFVR
SCLLMPLTR*

mRNA from alignment at H-elongata_contig123625:365..1109+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig123625.1781.1 ID=mRNA_H-elongata_contig123625.1781.1|Name=mRNA_H-elongata_contig123625.1781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=745bp|location=Sequence derived from alignment at H-elongata_contig123625:365..1109+ (Himanthalia elongata Himel1 dioecious)
AAGATGATTTTCGTTCTCGACAACGCATCGTACCACCACGGCTTCGACGG
GGAGGTAAAGGTGCCTGAAACCAACAGCAAGAAGTTTGGGCACAGAGCAT
TTCGGAAAAGAAACCGCGCCCAACGTTGGTGTTGCTGAATTTCACTTTGA
AGTCCCATAAGAGCCTGGGTCTAAGTTTCCTGGGGCGAGATCGGCAGGCG
GAGTAAGCAAAGAGGAGGACGCGATCCCCACTCGGGTGTACTTGAAGCTT
CACCACCCTACCAAACTCGTTGAACGGGTAGAGGCGTTCATGAAGAGTAA
AGGGTGGGAGTGGATTTGGACACCCCCGTACATGCCGTCTTTTCAGCCGA
TCGAGCAGTTTTGGGAGCATGGCAAGGCGTGTATCAGGTTTGGGAGCAGA
CTCGTCTGGGTTGGGGGTGGAAGCCGGCCATTTGTTCGAAGTTGTTTGCT
CATGCCATTGACGAGATGAACGAGGGGGTGAAGGACCTCCACAGGGTGCT
GAGCGGTACGATGGGTGCCCTTGTGATCCGACCTCGGCATGACAAGGACG
ACATCTGTCGAGCTGATGATGTTGAGGACTTGTTGGTCGCTGGGGGATGT
TGAAGCTTCTGATGATGCCGAGGTTGTATAATATCGTTTTGTTGATTTTT
TCTTCAAAGTAACGTCAATATAATACGGAACAAAGACAACATTGAGTATC
GTCTGAATCGTTTTCAGCACTGCTTGCATGTTCCCTACGTTTAAC

Coding sequence (CDS) from alignment at H-elongata_contig123625:365..1109+

>mRNA_H-elongata_contig123625.1781.1 ID=mRNA_H-elongata_contig123625.1781.1|Name=mRNA_H-elongata_contig123625.1781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig123625:365..1109+ (Himanthalia elongata Himel1 dioecious)
ATGAAGAGTAAAGGGTGGGAGTGGATTTGGACACCCCCGTACATGCCGTC
TTTTCAGCCGATCGAGCAGTTTTGGGAGCATGGCAAGGCGTGTATCAGGT
TTGGGAGCAGACTCGTCTGGGTTGGGGGTGGAAGCCGGCCATTTGTTCGA
AGTTGTTTGCTCATGCCATTGACGAGATGAATGAAGAGTAAAGGGTGGGA
GTGGATTTGGACACCCCCGTACATGCCGTCTTTTCAGCCGATCGAGCAGT
TTTGGGAGCATGGCAAGGCGTGTATCAGGTTTGGGAGCAGACTCGTCTGG
GTTGGGGGTGGAAGCCGGCCATTTGTTCGAAGTTGTTTGCTCATGCCATT
GACGAGATGA