mRNA_H-elongata_contig1236.1780.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1236.1780.1
Unique NamemRNA_H-elongata_contig1236.1780.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1236.1780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1236contigH-elongata_contig1236:10409..11539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size567
Cds size567
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1236.1780.1prot_H-elongata_contig1236.1780.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1236 10409..11539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.5742643-CDS-H-elongata_contig1236:10408..108131622929727.5742643-CDS-H-elongata_contig1236:10408..10813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1236 10409..10813 -
1691679134.8980815-CDS-H-elongata_contig1236:10408..108131691679134.8980815-CDS-H-elongata_contig1236:10408..10813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1236 10409..10813 -
1622929727.5893776-CDS-H-elongata_contig1236:10970..110421622929727.5893776-CDS-H-elongata_contig1236:10970..11042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1236 10971..11042 -
1691679134.9079075-CDS-H-elongata_contig1236:10970..110421691679134.9079075-CDS-H-elongata_contig1236:10970..11042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1236 10971..11042 -
1622929727.6068208-CDS-H-elongata_contig1236:11449..115391622929727.6068208-CDS-H-elongata_contig1236:11449..11539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1236 11450..11539 -
1691679134.9196954-CDS-H-elongata_contig1236:11449..115391691679134.9196954-CDS-H-elongata_contig1236:11449..11539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1236 11450..11539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1236.1780.1

>prot_H-elongata_contig1236.1780.1 ID=prot_H-elongata_contig1236.1780.1|Name=mRNA_H-elongata_contig1236.1780.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
MRSKNRRLTEIVLNDRDNCCDEGDRRAPEEAEDRPKIEVYTLGQFNHVVR
QELHVIQARRKEKHQQRRAWEDTAKTGNDLLRRFGSQDGYRCSRDKSHGS
PECRKQVAESLLEGGDDAGYGYASESSDDVERLQSSSCSRSREVLIAKGS
LEGDESGMKRLCPKISLGEKYGEYDAKFRARRRDGGGKE
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mRNA from alignment at H-elongata_contig1236:10409..11539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1236.1780.1 ID=mRNA_H-elongata_contig1236.1780.1|Name=mRNA_H-elongata_contig1236.1780.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1131bp|location=Sequence derived from alignment at H-elongata_contig1236:10409..11539- (Himanthalia elongata Himel1 dioecious)
ATGAGATCCAAAAATCGAAGATTGACTGAGATTGTGCTCAACGACCGCGA
CAATTGCTGCGACGAGGGCGATCGACGCGCTCCAGAAGAGGTGATATCAT
ACAGTTTTTCTTTGTTGATTATGATCCAAGGTTTCCAGAGCCCTGCATGC
GAAAATTGTTTTTGCGAAGTGTCCGGTATCTCGATGAGGGGAACTGTTGT
ACATCGGGTGAAGTACATTTGACGATCTACTCGTTGAAGAGGCGATGTTG
GGGACCATCCCGTTCGCTCTGCCCTGAAATACTCATACCACGAAAAAGGA
CCAGATAGGGGTTTTTGTGACCTGGTAGACTTATCCGACTATTTAATAGA
TGTACGTAGAGTCCACTGATGAAGGCGATGGCGGCGTGTCTGCGGTCTAA
ACAGAAAGAAAACGTTTTCAGCGTTATGTACTAGTAATAGAGGCCTCGGT
TCGTCGGACGTCGCGGCTCCATTTCATGCCGATTCGCCACTGACTAGGCC
GAAGATCGACCGAAGATAGAAGTCTACACGTTGGGGCAATTCAACCACGT
GGTTCGGCAAGAGCTACATGTAGGTGATCCCGCGATGACGTGAATCCCAC
GACTAGTTTACGCTTTCTGTAGCCACTCGCATGATGACAAAAATGGTAAG
AGCTGGAGAAAGTCTCCACACAACCTTGGAGTTATCTAAAATCACCACAT
ATTTCGTCTCAACGCTCGAAGATCAGGTCATTCAAGCAAGGAGAAAGGAA
AAGCACCAACAGCGCAGAGCATGGGAAGATACAGCAAAGACGGGCAATGA
TCTGCTGCGAAGGTTCGGAAGCCAAGACGGTTATCGTTGCAGCAGAGACA
AATCACACGGGAGCCCAGAATGCAGGAAACAGGTGGCGGAGTCATTACTT
GAAGGCGGCGACGACGCTGGTTACGGATACGCAAGCGAATCCTCTGACGA
TGTCGAGCGCTTGCAGAGCTCGTCATGCAGTCGTTCACGTGAGGTCCTAA
TCGCGAAAGGGTCACTTGAAGGAGATGAAAGCGGGATGAAGCGCCTATGC
CCTAAGATAAGTTTAGGAGAAAAATACGGTGAGTATGACGCGAAATTTCG
CGCAAGGAGAAGAGATGGTGGGGGGAAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig1236:10409..11539-

>mRNA_H-elongata_contig1236.1780.1 ID=mRNA_H-elongata_contig1236.1780.1|Name=mRNA_H-elongata_contig1236.1780.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig1236:10409..11539- (Himanthalia elongata Himel1 dioecious)
ATGAGATCCAAAAATCGAAGATTGACTGAGATTGTGCTCAACGACCGCGA
CAATTGCTGCGACGAGGGCGATCGACGCGCTCCAGAAGAGATGAGATCCA
AAAATCGAAGATTGACTGAGATTGTGCTCAACGACCGCGACAATTGCTGC
GACGAGGGCGATCGACGCGCTCCAGAAGAGGCCGAAGATCGACCGAAGAT
AGAAGTCTACACGTTGGGGCAATTCAACCACGTGGTTCGGCAAGAGCTAC
ATGCCGAAGATCGACCGAAGATAGAAGTCTACACGTTGGGGCAATTCAAC
CACGTGGTTCGGCAAGAGCTACATGTCATTCAAGCAAGGAGAAAGGAAAA
GCACCAACAGCGCAGAGCATGGGAAGATACAGCAAAGACGGGCAATGATC
TGCTGCGAAGGTTCGGAAGCCAAGACGGTTATCGTTGCAGCAGAGACAAA
TCACACGGGAGCCCAGAATGCAGGAAACAGGTGGCGGAGTCATTACTTGA
AGGCGGCGACGACGCTGGTTACGGATACGCAAGCGAATCCTCTGACGATG
TCGAGCGCTTGCAGAGCTCGTCATGCAGTCGTTCACGTGAGGTCCTAATC
GCGAAAGGGTCACTTGAAGGAGATGAAAGCGGGATGAAGCGCCTATGCCC
TAAGATAAGTTTAGGAGAAAAATACGGTGAGTATGACGCGAAATTTCGCG
CAAGGAGAAGAGATGGTGGGGGGAAGGAGGTCATTCAAGCAAGGAGAAAG
GAAAAGCACCAACAGCGCAGAGCATGGGAAGATACAGCAAAGACGGGCAA
TGATCTGCTGCGAAGGTTCGGAAGCCAAGACGGTTATCGTTGCAGCAGAG
ACAAATCACACGGGAGCCCAGAATGCAGGAAACAGGTGGCGGAGTCATTA
CTTGAAGGCGGCGACGACGCTGGTTACGGATACGCAAGCGAATCCTCTGA
CGATGTCGAGCGCTTGCAGAGCTCGTCATGCAGTCGTTCACGTGAGGTCC
TAATCGCGAAAGGGTCACTTGAAGGAGATGAAAGCGGGATGAAGCGCCTA
TGCCCTAAGATAAGTTTAGGAGAAAAATACGGTGAGTATGACGCGAAATT
TCGCGCAAGGAGAAGAGATGGTGGGGGGAAGGAG
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