mRNA_H-elongata_contig1235.1775.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5KQG9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQG9_9PHAE) HSP 1 Score: 205 bits (521), Expect = 6.880e-57 Identity = 115/241 (47.72%), Postives = 146/241 (60.58%), Query Frame = 3
Query: 459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
TA Q G++LVGE+ PC GC R + AA P +HID GPF ++L GSRY++MFVD+ASR+QR YG R KS + L V+RF+ADM G FR DN E+T SAF +C+ GIRRE T P P+QN VESA+ R +K GH AR + + +V L + V LW+ S LWAS FNRSAT AN G +SP E FFG +PP+ ++PFF+ RV R TK D
Sbjct: 112 TAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGTRAAVPFGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRAKSDT--LKFVQRFLADMNGMGTPGCFRMDNGGEFTGSAFSSFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHILAMG-HVDLSSVPNV-GVNGHRLWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKAD 348
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5JD95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD95_9PHAE) HSP 1 Score: 209 bits (533), Expect = 7.220e-56 Identity = 116/241 (48.13%), Postives = 147/241 (61.00%), Query Frame = 3
Query: 459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
TA Q G++LVGEL PC GC R + AA P VHID GPF E++ GSRY++MFVD+ASR+QR YG R KS + L VKRF+ADM G FR DN E+T +AFI++C+ GIRRE T P P+QN ESA+ R +K GH AR + + +V L + + LW+ S LWAS FNRSAT AN G +SP E FFG +PP+ ++PFF+ RV R TK D
Sbjct: 70 TAKQQGVRLVGELQPCVGCVEAKGRRAPVPRRGTRAAVPFGKVHIDLTGPFTEAMDGSRYLIMFVDSASRWQRAYGMRAKSDT--LKYVKRFLADMNGMGTPGCFRMDNGGEFTGAAFIEFCDAAGIRREYTAPNTPKQNAVAESAIWRAMKGGHAARRHILSMA-HVDLASVPNI-GANGQRLWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKAD 306
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5JL11_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL11_9PHAE) HSP 1 Score: 202 bits (513), Expect = 7.510e-56 Identity = 112/242 (46.28%), Postives = 147/242 (60.74%), Query Frame = 3
Query: 459 TALQHGIQLVGELAPCSGC-----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
TA Q G+QLVGEL PC GC R + AA P VHID GP+ E+ GSRY++MFVD+ASR+QR YG R KS + L +RF+AD+ G FR DN E+T++AF+ +C+ GIRRE T P P+QN VESA+ R +K GH AR V + + L + G+ D LW+ S +WAS FNRSAT+AN +SP E FFG +PP+ ++PFF+ RV R +K D
Sbjct: 69 TAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGMRAKSDT--LTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHVLSMG-HFDLASIPGM-DANGHRLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKAD 306
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5L7I6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I6_9PHAE) HSP 1 Score: 203 bits (517), Expect = 5.290e-55 Identity = 113/242 (46.69%), Postives = 147/242 (60.74%), Query Frame = 3
Query: 459 TALQHGIQLVGELAPCSGC-----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
TA Q G+QLVGEL PC GC R + AA P VHID GP+ E+ GSRY++MFVD+ASR+QR YG R KS + L +RF+AD+ G FR DN E+T++AF+ +C+ GIRRE T P P+QN VESA+ R +K GH AR V + N L + G+ D LW+ S +WAS FNRSAT+AN +SP E FFG +PP+ ++PFF+ RV R +K D
Sbjct: 4 TAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGMRAKSDT--LTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHVLSVG-NFDLASIPGM-DANGHRLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKAD 241
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5K469_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K469_9PHAE) HSP 1 Score: 199 bits (507), Expect = 2.590e-54 Identity = 113/241 (46.89%), Postives = 143/241 (59.34%), Query Frame = 3
Query: 459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
TA Q G++LVGE+ PC GC R + AA P +HID GPF ++L GSRY++MFVD+ASR+QR YG R KS + L V+RF+ADM G FR DN E+T SAF +C+ GIRRE T P P+QN VESA+ R +K GH AR + + +V L + V LW+ S LWAS FNRSAT AN +S E FFG +PP+ ++PFF RV R TK D
Sbjct: 4 TAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGTRAAVPFGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRAKSDT--LKFVQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHILAMG-HVDLSSIPNV-GVNGHRLWLASALWASACFNRSATKANLSWMSSFEAFFGRKPPLTVVPFFHEGMMRVKRATKAD 240
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5JS38_9PHAE (Integrase catalytic domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS38_9PHAE) HSP 1 Score: 205 bits (522), Expect = 4.670e-54 Identity = 115/241 (47.72%), Postives = 146/241 (60.58%), Query Frame = 3
Query: 459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
TA Q G++LVGE+ PC GC R + AA P +HID GPF ++L GSRY++MFVD+ASR+QR YG R KS + L V+RF+ADM G FR DN E+T SAF +C+ GIRRE T P P+QN VESA+ R +K GH AR + + +V L + V LW+ S LWAS FNRSAT AN G +SP E FFG +PP+ ++PFF+ RV R TK D
Sbjct: 112 TAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGTRAAVPFGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRAKSDT--LKFVQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHILAMG-HVDLSSVPNV-GVNGHRLWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKAD 348
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5KS66_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS66_9PHAE) HSP 1 Score: 205 bits (522), Expect = 6.560e-54 Identity = 113/242 (46.69%), Postives = 141/242 (58.26%), Query Frame = 3
Query: 462 ALQHGIQLVGELAPCSGCSRTTSWAAA-----------PMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMDP 1145
A QHG++L G L PC GC + A P D+ HID GP SLGGS +++MFVD+ SR+ + YG R KS + L VK+F+ADM GV R FR DN E+ FI +C+ GIRR T P PQ+NGP E A+ R KAGH ARL +LFP + R+ G + LW+ES WA+ GFNRS T AN G SP E+F G PP+ I+PF +P Y RV R KMDP
Sbjct: 57 AKQHGLRLTGVLQPCGGCLQAKGKKAGVPHQLGTRAERPHDLWHIDLCGPMTASLGGSFFMIMFVDSFSRWMKLYGMRRKSDT--LAFVKKFLADMSGTGVPRSFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQRNGPAEGAIWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGER-LWLESCHWAAGGFNRSPTKANVGYKSPHELFTGRPPPLQIVPFLQPGYMRVTRARKMDP 295
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5LQ43_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ43_9PHAE) HSP 1 Score: 202 bits (515), Expect = 7.730e-54 Identity = 117/261 (44.83%), Postives = 154/261 (59.00%), Query Frame = 3
Query: 459 TALQHGIQLVGELAPCSGC-----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMDPHN------HGGGSCTRAT 1181
TA Q G+QLVGEL PC GC R + AA P VHID GP+ E+ GSRY++MFVD+ASR+QR YG R KS + L +RF+AD+ G FR DN E+T++AF+ +C+ GIRRE T P P+QN VESA+ R +K GH AR V + + L + G+ D LW+ S +WAS FNRSAT+AN +SP E FFG +PP+ ++PFF+ RV R +K D + HG S + AT
Sbjct: 4 TAKQQGVQLVGELQPCVGCIEAKGRRTPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGMRAKSDT--LTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHVLSMG-HFDLASIPGM-DANGHRLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARSHSDAT 260
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5JT85_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT85_9PHAE) HSP 1 Score: 199 bits (505), Expect = 9.010e-54 Identity = 115/241 (47.72%), Postives = 144/241 (59.75%), Query Frame = 3
Query: 459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
TA Q G++LVGE+ PC GC R + AA P V ID GPF ++L GSRY++MFVD+ASR+QR YG R KS + L V+ F+ADM G FR DN E+T SAF +C+ GIRRE TTP P+QN VESA+ +K GH AR + + +V L + V LW+ S LWAS FNRSAT AN G +SP E FFG +PP+ I+PFF+ RV R TK D
Sbjct: 24 TAKQQGVRLVGEMQPCLGCVEAKGRRAPVPRRGTRAAVPFGKVQIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRTKSDT--LKFVQWFLADMNGMGTPGCFRVDNGGEFTGSAFASFCDAAGIRREYTTPDTPKQNAVVESAIWCAMKWGHAARRHILAMG-HVDLSSIPNV-GVNGHRLWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTIVPFFQEGIMRVKRATKAD 260
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.030e-53 Identity = 115/242 (47.52%), Postives = 142/242 (58.68%), Query Frame = 3
Query: 462 ALQHGIQLVGELAPCSGCSRTTSWAAA-----------PMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMDP 1145
A QHG++L G L PC GC + A P D+ HID GP SLGGS +++MFVD+ SR+ + YG R KS + L VK+F+ADM GV R FR DN E+ FI +C+ GIRR T P PQQNGP ESA+ R KAGH ARL +LFP + R+ G + LW+ES WA+ GFNRS T AN G SP E+F G PP+ I+PF +P Y RV R KMDP
Sbjct: 57 AKQHGLRLTGVLQPCGGCLQAKGKKAGVPHQLGTRAERPHDLWHIDLCGPMTASLGGSFFMIMFVDSFSRWMKLYGMRRKSDT--LAFVKKFLADMSGTGVPRSFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQQNGPAESAIWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGER-LWLESCHWAAGGFNRSPTKANVGYKSPHELFTGRPPPLQIVPFLQPGYMRVTRARKMDP 295 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1235.1775.1 >prot_H-elongata_contig1235.1775.1 ID=prot_H-elongata_contig1235.1775.1|Name=mRNA_H-elongata_contig1235.1775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp MQSPPGPHGPPSPAPPSATNWSFSSWHSQAQTHYVPPATALQHGIQLVGEback to top mRNA from alignment at H-elongata_contig1235:13656..16475- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1235.1775.1 ID=mRNA_H-elongata_contig1235.1775.1|Name=mRNA_H-elongata_contig1235.1775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2820bp|location=Sequence derived from alignment at H-elongata_contig1235:13656..16475- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1235:13656..16475- >mRNA_H-elongata_contig1235.1775.1 ID=mRNA_H-elongata_contig1235.1775.1|Name=mRNA_H-elongata_contig1235.1775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig1235:13656..16475- (Himanthalia elongata Himel1 dioecious)back to top |