mRNA_H-elongata_contig123485.1773.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123485.1773.1
Unique NamemRNA_H-elongata_contig123485.1773.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: D7G6L2_ECTSI (CTP synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L2_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 9.050e-115
Identity = 175/204 (85.78%), Postives = 182/204 (89.22%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVPVS 612
            NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITT K        VYQ VI KER+G YLGKT QVVPH+TDEIQAWIERVA+IPVDGSN RPDVC IEVGGTVGDIESSVFLEALRQFQFRVGR RMSLVHVTLVPVLG+VGEQKTKPTQQTVRELRS GLHPDVICCRS E+LEEST +KI IFC VP +
Sbjct:   71 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGK--------VYQSVISKERKGEYLGKTVQVVPHITDEIQAWIERVAEIPVDGSNQRPDVCLIEVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCRSAELLEESTRNKISIFCQVPAT 266
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BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: A0A835Z0Y6_9STRA (CTP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y6_9STRA)

HSP 1 Score: 318 bits (815), Expect = 2.610e-103
Identity = 162/204 (79.41%), Postives = 170/204 (83.33%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVPVS 612
            NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL VRLSRDHNITT K        VYQEVI KER+G YLGKT QVVPH+TDEIQ WIERVA  PVDGS   PDVC +EVGGTVGDIES VFLEALRQFQFRVG+  M LVHV+LVPVLG+VGEQKTKPTQ  VRELRS GLHPDVICCRS +MLEEST  KI IFC VP +
Sbjct:   44 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLSVRLSRDHNITTGK--------VYQEVILKERRGDYLGKTVQVVPHITDEIQDWIERVAVTPVDGSGCCPDVCLVEVGGTVGDIESMVFLEALRQFQFRVGQENMCLVHVSLVPVLGSVGEQKTKPTQHGVRELRSVGLHPDVICCRSADMLEESTRRKISIFCHVPAT 239
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BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: A0A7S1G971_9STRA (CTP synthase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G971_9STRA)

HSP 1 Score: 290 bits (742), Expect = 3.380e-92
Identity = 145/202 (71.78%), Postives = 162/202 (80.20%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVP 606
            N DAGTMSPFEHGEVFVLDDGGEADLDLGNYERFL VRLSR+HNITT K        VYQ+VI  ER+G YLGKT Q++PH+TD IQ WIERVA +PVDGS + PDVC IEVGGTVGDIES VFLEALRQFQFRVGR  +   HV+LVPVLG VGEQKTKPTQ TV+ELRS G++PDV+ CRS   + +ST  K+  FC VP
Sbjct:   60 NVDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLNVRLSREHNITTGK--------VYQQVISAERRGDYLGKTVQLIPHITDAIQDWIERVAHVPVDGSGMPPDVCMIEVGGTVGDIESLVFLEALRQFQFRVGRDNIIFFHVSLVPVLGVVGEQKTKPTQHTVKELRSHGINPDVLICRSEHAVSDSTRAKLAQFCHVP 253
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BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: F0XZ58_AURAN (CTP synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ58_AURAN)

HSP 1 Score: 285 bits (728), Expect = 4.310e-90
Identity = 145/204 (71.08%), Postives = 160/204 (78.43%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVPVS 612
            NTDAGTMSPFEHGE FVLDDGGE DLDLGNYERFL + L+RDHNITT K        VY +V+ KER+G YLGKT QVVPHVT EIQ WIERVA IP DG    PDVC +EVGGTVGDIESSVFLEALRQFQF+V +G   LVHV+LVP LG+VGEQKTKPTQ  V+ELR  GL PDVI CR+ + LE+ST  K+ IFC VP S
Sbjct:   44 NTDAGTMSPFEHGETFVLDDGGETDLDLGNYERFLDLSLTRDHNITTGK--------VYAKVLAKERKGDYLGKTVQVVPHVTQEIQDWIERVAQIPTDGLEGPPDVCLVEVGGTVGDIESSVFLEALRQFQFQVPKGDFCLVHVSLVPCLGSVGEQKTKPTQHGVKELRGLGLSPDVIVCRAADELEDSTRSKLGIFCHVPAS 239
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BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: A0A446PUJ4_TRITD (CTP_synth_N domain-containing protein n=5 Tax=Triticum TaxID=4564 RepID=A0A446PUJ4_TRITD)

HSP 1 Score: 278 bits (711), Expect = 4.930e-90
Identity = 139/204 (68.14%), Postives = 157/204 (76.96%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVPVS 612
            NTDAGTMSPFEHGEV+VLDDGGE DLDLGNYERFL ++L+RDHNITT K        +YQ VI KER+G YLGKT QVVPH+TDEIQ WIERVA  PVDG    PDVC IE+GGT+GDIES  F+EAL QF +RVG G + LVHV+LVPVL  VGEQKTKPTQ +VR LR  GL PD++ CRS E LEE    K+  FC VP+S
Sbjct:   44 NTDAGTMSPFEHGEVYVLDDGGEVDLDLGNYERFLDIKLTRDHNITTGK--------IYQAVIDKERRGDYLGKTVQVVPHITDEIQDWIERVAIKPVDGKEGPPDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNLCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLAPDILACRSTEPLEEHVTSKLSQFCNVPIS 239
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BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: A0A024UQ27_9STRA (CTP synthase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UQ27_9STRA)

HSP 1 Score: 284 bits (726), Expect = 6.010e-90
Identity = 146/212 (68.87%), Postives = 165/212 (77.83%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVP----VSVRDI 624
            N DAGTMSPFEHGEVFVLDDGGE DLDLGNYERFLG+ L++DHNITT K        VYQ+VI +ER+G YLGKT QVVPHVTD IQAWIERVA IPVDG +   D+C IEVGGTVGDIES VFLEALRQFQF+VG     LVHV+LVPV+G+VGEQKTKPTQ  ++ELRS GL PDVI CR+   LE +T  KI +FC V     +SV D+
Sbjct:   44 NCDAGTMSPFEHGEVFVLDDGGEGDLDLGNYERFLGITLTKDHNITTGK--------VYQQVIRRERRGDYLGKTVQVVPHVTDAIQAWIERVAQIPVDGDSTPADICLIEVGGTVGDIESMVFLEALRQFQFKVGVDNFCLVHVSLVPVMGSVGEQKTKPTQHAIKELRSAGLTPDVIICRASNQLEPATRAKIGMFCQVSQNHVLSVHDV 247
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BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: A0A2E9B913_9ARCH (CTP synthase n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A2E9B913_9ARCH)

HSP 1 Score: 283 bits (723), Expect = 1.060e-89
Identity = 139/204 (68.14%), Postives = 165/204 (80.88%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVPVS 612
            N+DAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL + L+RD+N+TT K        VY +VI  ER+G YLGKT QVVPH+TDEIQ W+ERVA+IPVDG+  +PD+C IE+GGTVGDIES+ F+EALRQFQFRVGR    L+HV+LVPV+G VGEQKTKPTQ TV+ELR+ GL PD + CRS   LEE+T +K+ +FC V VS
Sbjct:   44 NSDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDITLTRDNNLTTGK--------VYSKVIESERRGDYLGKTVQVVPHITDEIQDWLERVANIPVDGNGDQPDICIIELGGTVGDIESAPFIEALRQFQFRVGRENFILIHVSLVPVVGVVGEQKTKPTQHTVKELRAAGLSPDFLVCRSENPLEEATKEKLALFCHVDVS 239
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BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: A0A453F537_AEGTS (CTP_synth_N domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453F537_AEGTS)

HSP 1 Score: 277 bits (709), Expect = 1.560e-89
Identity = 140/204 (68.63%), Postives = 156/204 (76.47%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVPVS 612
            NTDAGTMSPFEHGEV+VLDDGGE DLDLGNYERFL ++L+RDHNITT K        VYQ VI KER+G YLGKT QVVPH+TDEIQ WIERVA  PVDG    PDVC IE+GGT+GDIES  F+EAL QF +RVG G   LVHV+LVPVL  VGEQKTKPTQ +VR LR  GL PD++ CRS E LEE    K+  FC VP+S
Sbjct:   44 NTDAGTMSPFEHGEVYVLDDGGEVDLDLGNYERFLDIKLTRDHNITTGK--------VYQAVIDKERRGDYLGKTVQVVPHITDEIQDWIERVAIKPVDGKEGPPDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLAPDILACRSTEPLEEHVTTKLSQFCNVPIS 239
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BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: A0A7S2WHY8_9STRA (CTP synthase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WHY8_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.660e-89
Identity = 146/212 (68.87%), Postives = 164/212 (77.36%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVP----VSVRDI 624
            NTDAGTMSPFEHGE FVL+DGGE DLDLGNYERFL V L++DHNITT K        VY  VI +ER+G YLGKT QVVPH+TDEIQ WI RVA IPVDG+   PDVC +EVGGTVGDIES VFLEA+RQFQFRVGR R  LVHV+L+PVLG+VGEQKTKPTQ  V+EL S GL PD+I CRS  ++EE+T  KI  FC V     VSV D+
Sbjct:   78 NTDAGTMSPFEHGETFVLNDGGETDLDLGNYERFLDVELTKDHNITTGK--------VYSTVIERERKGDYLGKTVQVVPHITDEIQNWIARVAQIPVDGTTKSPDVCLVEVGGTVGDIESMVFLEAIRQFQFRVGRERCCLVHVSLIPVLGSVGEQKTKPTQHGVKELMSLGLSPDIIVCRSSHVVEEATRKKISAFCHVAPSCVVSVHDV 281
[Close]
BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Match: A0A453F570_AEGTS (CTP synthase n=3 Tax=Triticinae TaxID=1648030 RepID=A0A453F570_AEGTS)

HSP 1 Score: 277 bits (709), Expect = 7.430e-89
Identity = 140/204 (68.63%), Postives = 156/204 (76.47%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLHNVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPDVCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGEQKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVPVS 612
            NTDAGTMSPFEHGEV+VLDDGGE DLDLGNYERFL ++L+RDHNITT K        VYQ VI KER+G YLGKT QVVPH+TDEIQ WIERVA  PVDG    PDVC IE+GGT+GDIES  F+EAL QF +RVG G   LVHV+LVPVL  VGEQKTKPTQ +VR LR  GL PD++ CRS E LEE    K+  FC VP+S
Sbjct:   44 NTDAGTMSPFEHGEVYVLDDGGEVDLDLGNYERFLDIKLTRDHNITTGK--------VYQAVIDKERRGDYLGKTVQVVPHITDEIQDWIERVAIKPVDGKEGPPDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLAPDILACRSTEPLEEHVTTKLSQFCNVPIS 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123485.1773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6L2_ECTSI9.050e-11585.78CTP synthase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A835Z0Y6_9STRA2.610e-10379.41CTP synthase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S1G971_9STRA3.380e-9271.78CTP synthase (Fragment) n=1 Tax=Bicosoecida sp. CB... [more]
F0XZ58_AURAN4.310e-9071.08CTP synthase n=1 Tax=Aureococcus anophagefferens T... [more]
A0A446PUJ4_TRITD4.930e-9068.14CTP_synth_N domain-containing protein n=5 Tax=Trit... [more]
A0A024UQ27_9STRA6.010e-9068.87CTP synthase n=5 Tax=Aphanomyces TaxID=100860 RepI... [more]
A0A2E9B913_9ARCH1.060e-8968.14CTP synthase n=1 Tax=Thermoplasmata archaeon TaxID... [more]
A0A453F537_AEGTS1.560e-8968.63CTP_synth_N domain-containing protein n=1 Tax=Aegi... [more]
A0A7S2WHY8_9STRA1.660e-8968.87CTP synthase n=1 Tax=labyrinthulid quahog parasite... [more]
A0A453F570_AEGTS7.430e-8968.63CTP synthase n=3 Tax=Triticinae TaxID=1648030 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123485contigH-elongata_contig123485:186..1817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.0
Seed ortholog evalue6.1e-90
Seed eggNOG ortholog2880.D7G6L2
Preferred nameCTPS2
KEGG rclassRC00010,RC00074
KEGG koko:K01937
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00052
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001775,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006629,GO:0006644,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0008610,GO:0008654,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009791,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0030097,GO:0032501,GO:0032502,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0035166,GO:0035167,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0048513,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097268,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.'de novo' CTP biosynthetic process
EggNOG OGsCOG0504@1,KOG2387@2759
EC6.3.4.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-11_003700.1
Exons5
Model size645
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123485.1773.1prot_H-elongata_contig123485.1773.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123485 204..1817 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.4881103-UTR-H-elongata_contig123485:185..2031622929726.4881103-UTR-H-elongata_contig123485:185..203Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123485 186..203 +
1691679134.447563-UTR-H-elongata_contig123485:185..2031691679134.447563-UTR-H-elongata_contig123485:185..203Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123485 186..203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.5062585-CDS-H-elongata_contig123485:203..3561622929726.5062585-CDS-H-elongata_contig123485:203..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 204..356 +
1691679134.459691-CDS-H-elongata_contig123485:203..3561691679134.459691-CDS-H-elongata_contig123485:203..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 204..356 +
1622929726.5263948-CDS-H-elongata_contig123485:736..8261622929726.5263948-CDS-H-elongata_contig123485:736..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 737..826 +
1691679134.4686034-CDS-H-elongata_contig123485:736..8261691679134.4686034-CDS-H-elongata_contig123485:736..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 737..826 +
1622929726.5383663-CDS-H-elongata_contig123485:1108..11801622929726.5383663-CDS-H-elongata_contig123485:1108..1180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 1109..1180 +
1691679134.4780135-CDS-H-elongata_contig123485:1108..11801691679134.4780135-CDS-H-elongata_contig123485:1108..1180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 1109..1180 +
1622929726.5540261-CDS-H-elongata_contig123485:1320..15351622929726.5540261-CDS-H-elongata_contig123485:1320..1535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 1321..1535 +
1691679134.4879801-CDS-H-elongata_contig123485:1320..15351691679134.4879801-CDS-H-elongata_contig123485:1320..1535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 1321..1535 +
1622929726.576176-CDS-H-elongata_contig123485:1720..18171622929726.576176-CDS-H-elongata_contig123485:1720..1817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 1721..1817 +
1691679134.4980588-CDS-H-elongata_contig123485:1720..18171691679134.4980588-CDS-H-elongata_contig123485:1720..1817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123485 1721..1817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123485.1773.1

>prot_H-elongata_contig123485.1773.1 ID=prot_H-elongata_contig123485.1773.1|Name=mRNA_H-elongata_contig123485.1773.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
MSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTDKASCSDLH
NVYQEVIFKERQGSYLGKTAQVVPHVTDEIQAWIERVADIPVDGSNLRPD
VCFIEVGGTVGDIESSVFLEALRQFQFRVGRGRMSLVHVTLVPVLGTVGE
QKTKPTQQTVRELRSFGLHPDVICCRSLEMLEESTLDKILIFCLVPVSVR
DIVSYVVF*
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mRNA from alignment at H-elongata_contig123485:186..1817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123485.1773.1 ID=mRNA_H-elongata_contig123485.1773.1|Name=mRNA_H-elongata_contig123485.1773.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1632bp|location=Sequence derived from alignment at H-elongata_contig123485:186..1817+ (Himanthalia elongata Himel1 dioecious)
AACACGGACGCTGGAACCATGTCTCCATTCGAGCACGGCGAAGTGTTTGT
GCTGGACGATGGCGGGGAGGCGGATTTGGATCTCGGCAATTACGAGAGGT
TTCTCGGCGTTCGTTTGTCGAGAGACCACAACATCACCACTGACAAGGCA
AGCTGTTCGGATTTGCACAACGTGAACGTGTTTCACGTCCCTAATGGGGG
AAGAAGCGCGACCGTACTTGTCTTCGCGTGTTGCCGTGCTCGTCTTGCGT
CTTTGCGTTATACGCGTTGTAGATCATGTAAAATGTCGTTCGCCGTGCGA
GGCGCCTGTGTAAAGCGCACTACAAACTTATGGTAGATCAAAGGCAACGT
CTGAGGAGCAATCAACCAACCGCATAAATGATACAAACTGAATGTTCAGT
CGGGATTGAATCCAACTCTCTAGCGGGCCCGTCCAGCCTACCAACTGTTT
CGGCACTTGCAACCCTGCAGGCACGTGGGGATAAGGGTTCATGTGCGGCT
TAGACGTAGTTGCCATTCACTCTGCGTGTGATGATGGCATGCTGTGGATA
GGTGTACCAAGAAGTAATCTTTAAAGAACGACAGGGAAGCTACCTGGGCA
AAACCGCACAAGTTGTACCCCATGTGACGGACGAGATCCAGGTCAGGCTG
TTTGGCCTCGGAGTGCCCACATGGGCCTCGGTGTAAGGACTACAGCTATA
CATTATCTAGATTAAATCAATCGTGTTTCAAGAATTCAACTTGATCGGAA
GGCTCCAAACAATCTGACTACTTTGTACCCGTTACCGTTGTTTTATAGTA
ACATTGCGACGTGGGCAAATGTCAGGGCGCACATTGCAGTGCTCGCGTAG
CACCGTTCCTGAGCTACAATTTTGCGAGGTTTACTGACATGTATACCTCG
TCATTGGTGTTGTTGATACGCAGGCATGGATAGAGCGGGTCGCAGATATT
CCCGTAGATGGCTCTAACCTCCGACCTGACGTGTGCTTCATCGAGGTAAG
TCGGTCATCAGCCTTTTTCTATGTTGCGTAAATTACCGTCCGTCGAAGTA
GTTAATATCACCTAATGGTTTCTAACCGATGAAGCCAACCTTATAGCCTC
ACTCAGAAACAAAAGACGCGCTGTCTTTAACACAGGTCGGAGGAACCGTG
GGCGACATCGAATCGTCCGTTTTCCTGGAGGCATTACGCCAATTCCAGTT
CCGCGTGGGCCGCGGGCGCATGTCTCTAGTCCATGTAACCCTCGTTCCGG
TATTGGGAACCGTCGGGGAACAGAAGACAAAGCCAACTCAACAGACCGTA
CGAGAGCTACGTTCGTTTGGGCTCCACCCCGACGTGATTTGCTGCAGAAG
GTAATCCAAACTTGGCGGAAATCGCCATGATTTCTGTATCGAGTCTGGAT
TAGTCGACAATATGGGGAAAGGAGAGGGAAATGATAATGTTTTCATGTTT
CCAGCTTCAGGTTATCTGTTTGATAAGTGACCCTTTGTCTATTTGGCTTT
CGTCTTGTCCCTTCTCGTGGCGGAATGGTGTTCAGCTTGGAGATGCTTGA
GGAGTCTACGCTGGACAAAATATTAATATTTTGCCTAGTTCCTGTGAGTG
TTAGGGATATAGTGTCTTATGTTGTCTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig123485:186..1817+

>mRNA_H-elongata_contig123485.1773.1 ID=mRNA_H-elongata_contig123485.1773.1|Name=mRNA_H-elongata_contig123485.1773.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig123485:186..1817+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCCATTCGAGCACGGCGAAGTGTTTGTGCTGGACGATGGCGGGGA
GGCGGATTTGGATCTCGGCAATTACGAGAGGTTTCTCGGCGTTCGTTTGT
CGAGAGACCACAACATCACCACTGACAAGGCAAGCTGTTCGGATTTGCAC
AACATGTCTCCATTCGAGCACGGCGAAGTGTTTGTGCTGGACGATGGCGG
GGAGGCGGATTTGGATCTCGGCAATTACGAGAGGTTTCTCGGCGTTCGTT
TGTCGAGAGACCACAACATCACCACTGACAAGGCAAGCTGTTCGGATTTG
CACAACGTGTACCAAGAAGTAATCTTTAAAGAACGACAGGGAAGCTACCT
GGGCAAAACCGCACAAGTTGTACCCCATGTGACGGACGAGATCCAGGTGT
ACCAAGAAGTAATCTTTAAAGAACGACAGGGAAGCTACCTGGGCAAAACC
GCACAAGTTGTACCCCATGTGACGGACGAGATCCAGGCATGGATAGAGCG
GGTCGCAGATATTCCCGTAGATGGCTCTAACCTCCGACCTGACGTGTGCT
TCATCGAGGCATGGATAGAGCGGGTCGCAGATATTCCCGTAGATGGCTCT
AACCTCCGACCTGACGTGTGCTTCATCGAGGTCGGAGGAACCGTGGGCGA
CATCGAATCGTCCGTTTTCCTGGAGGCATTACGCCAATTCCAGTTCCGCG
TGGGCCGCGGGCGCATGTCTCTAGTCCATGTAACCCTCGTTCCGGTATTG
GGAACCGTCGGGGAACAGAAGACAAAGCCAACTCAACAGACCGTACGAGA
GCTACGTTCGTTTGGGCTCCACCCCGACGTGATTTGCTGCAGAAGGTCGG
AGGAACCGTGGGCGACATCGAATCGTCCGTTTTCCTGGAGGCATTACGCC
AATTCCAGTTCCGCGTGGGCCGCGGGCGCATGTCTCTAGTCCATGTAACC
CTCGTTCCGGTATTGGGAACCGTCGGGGAACAGAAGACAAAGCCAACTCA
ACAGACCGTACGAGAGCTACGTTCGTTTGGGCTCCACCCCGACGTGATTT
GCTGCAGAAGCTTGGAGATGCTTGAGGAGTCTACGCTGGACAAAATATTA
ATATTTTGCCTAGTTCCTGTGAGTGTTAGGGATATAGTGTCTTATGTTGT
CTTTTGACTTGGAGATGCTTGAGGAGTCTACGCTGGACAAAATATTAATA
TTTTGCCTAGTTCCTGTGAGTGTTAGGGATATAGTGTCTTATGTTGTCTT
TTGA
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