mRNA_H-elongata_contig123428.1770.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123428.1770.1
Unique NamemRNA_H-elongata_contig123428.1770.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig123428.1770.1 vs. uniprot
Match: A0A6H5KVY2_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY2_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.610e-43
Identity = 91/143 (63.64%), Postives = 103/143 (72.03%), Query Frame = 1 
Query:  448 KEECRCGEACCLSSQDSFSASPRKRPSEALGHPDLTPRSVVEGLGPVTGLIPPHQPFRHRKRQRNSLTPILSAPRSVKYECSLCKEPYQSQVSSNPWWSLFRHECPKCCRVQIPRVDAASAAVCVDSIHAVCAEEGEGAESDG 876
            K+ECRCG+A C     S   + RKRP   L  P L+       L  VTGL P HQ  R RKRQR SL P+LSAPR+V YECSLCKE Y S+++SNPWWSLF HECP+C R+QIPRVDAASAAV VD IHAVCAEEGEG +SDG
Sbjct:  612 KQECRCGQAAC----PSLITAARKRPMAELS-PSLSGADGPAPLSMVTGL-PFHQSSRQRKRQR-SLAPVLSAPRTVSYECSLCKESYSSEIASNPWWSLFLHECPRCHRMQIPRVDAASAAVSVDYIHAVCAEEGEGCDSDG 747
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BLAST of mRNA_H-elongata_contig123428.1770.1 vs. uniprot
Match: D7FUA8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA8_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.010e-42
Identity = 90/143 (62.94%), Postives = 102/143 (71.33%), Query Frame = 1 
Query:  448 KEECRCGEACCLSSQDSFSASPRKRPSEALGHPDLTPRSVVEGLGPVTGLIPPHQPFRHRKRQRNSLTPILSAPRSVKYECSLCKEPYQSQVSSNPWWSLFRHECPKCCRVQIPRVDAASAAVCVDSIHAVCAEEGEGAESDG 876
            K+ECRCG+A C     S   + RKRP   L  P L+       L  VTGL P HQ  R RKRQR SL P+LSAPR+V YECSLCKE Y S+++SNPWWSLF HECP+C R+QIPRVDA SAAV VD IHAVCAEEGEG +SDG
Sbjct:  397 KQECRCGQAAC----PSLITAARKRPVAELS-PSLSGADGPAPLSMVTGL-PFHQSSRQRKRQR-SLAPVLSAPRTVSYECSLCKESYPSEIASNPWWSLFLHECPRCHRMQIPRVDATSAAVSVDYIHAVCAEEGEGCDSDG 532
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BLAST of mRNA_H-elongata_contig123428.1770.1 vs. uniprot
Match: A0A7S1Y1W2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y1W2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.600e-10
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  667 PRSVKYECSLCKEPYQSQVSSNPWWSLFRHECPKCCRVQIPRVDAASAAVCVDSIHAVCAEEGEGAESDG 876
            PRSV+Y C+LC E Y S    NPWW+L  HECPKC + QIPR+D +S +  ++   A+ A   + + S G
Sbjct:   79 PRSVEYICALCSEAYNSTCEYNPWWALTSHECPKCRKTQIPRIDISSPSNAIEYHPALLANAEDASGSGG 148
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BLAST of mRNA_H-elongata_contig123428.1770.1 vs. uniprot
Match: A0A7S1ULK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1ULK5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.590e-10
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  667 PRSVKYECSLCKEPYQSQVSSNPWWSLFRHECPKCCRVQIPRVDAASAAVCVDSIHAVCAEEGEGAESDG 876
            PRSV+Y C+LC E Y S    NPWW+L  HECPKC + QIPR+D +S +  ++   A+ A   + + S G
Sbjct:  562 PRSVEYICALCSEAYNSTCEYNPWWALTSHECPKCRKTQIPRIDISSPSNAIEYHPALLANAEDASGSGG 631
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BLAST of mRNA_H-elongata_contig123428.1770.1 vs. uniprot
Match: A0A6U3TJG2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TJG2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.420e-9
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  667 PRSVKYECSLCKEPYQSQVSSNPWWSLFRHECPKCCRVQIPRVDAASAAVCVDSIHAVCAEEGEG 861
            PR+V+Y CS+C E Y S    NPWW L  HECPKC +VQIPR+D ++ A  ++   A+ A   +G
Sbjct:  621 PRTVEYVCSMCNEGYPSNSDVNPWWVLTSHECPKCGKVQIPRLDISAPANAIEYHPALLAHMDDG 685
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BLAST of mRNA_H-elongata_contig123428.1770.1 vs. uniprot
Match: A0A1Z5JFQ6_FISSO (TAZ-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ6_FISSO)

HSP 1 Score: 68.6 bits (166), Expect = 3.070e-9
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  628 KRQRNSLTPILSAPRSVKYECSLCKEPYQSQVSSNPWWSLFRHECPKCCRVQIPRVDAASAAVCVD 825
            KR++ S       PR+V+Y C+LC E Y S    NPWW+L + ECPKC ++QIPR+D  + A  ++
Sbjct:  435 KRKKGSSGSKKRGPRNVEYMCALCNEVYNSTCDYNPWWALTQEECPKCQKIQIPRLDIGAPANAIE 500
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BLAST of mRNA_H-elongata_contig123428.1770.1 vs. uniprot
Match: A0A7S2VFH5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VFH5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.420e-8
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  616 FRHRKRQRNSLTPILSAPRSVKYECSLCKEPYQSQVSSNPWWSLFRHECPKCCRVQIPRVDAASAAVCVD 825
             R  K+QR         PR V+Y C+LC E Y      NPWW+L +H+CPKC + QIP+VD ++ A  ++
Sbjct:  519 LRQAKKQRG--------PRQVEYMCALCNETYSGTCEFNPWWALTQHDCPKCRKTQIPKVDISAPANAIE 580
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BLAST of mRNA_H-elongata_contig123428.1770.1 vs. uniprot
Match: B8BQM0_THAPS (TAZ-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQM0_THAPS)

HSP 1 Score: 65.1 bits (157), Expect = 4.630e-8
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  667 PRSVKYECSLCKEPYQSQVSSNPWWSLFRHECPKCCRVQIPRVD 798
            PR+V+Y C++C E Y S    NPWW+L  HECPKC + QIPR+D
Sbjct:  784 PRTVEYVCAVCNEGYVSTCEMNPWWALINHECPKCGKNQIPRLD 827
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123428.1770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KVY2_9PHAE2.610e-4363.64TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FUA8_ECTSI1.010e-4262.94TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S1Y1W2_9STRA4.600e-1045.71Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1ULK5_9STRA5.590e-1045.71Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A6U3TJG2_9STRA2.420e-947.69Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1Z5JFQ6_FISSO3.070e-943.94TAZ-type domain-containing protein n=2 Tax=Fistuli... [more]
A0A7S2VFH5_9STRA1.420e-841.43Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
B8BQM0_THAPS4.630e-856.82TAZ-type domain-containing protein n=1 Tax=Thalass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123428contigH-elongata_contig123428:892..1770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue3.4e-38
Seed eggNOG ortholog2880.D7FUA8
EggNOG free text desc.TAZ zinc finger
EggNOG OGs2BJCE@1,2S1FW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size879
Cds size879
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.1432726-CDS-H-elongata_contig123428:891..17701622929726.1432726-CDS-H-elongata_contig123428:891..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123428 892..1770 -
1691679134.2757428-CDS-H-elongata_contig123428:891..17701691679134.2757428-CDS-H-elongata_contig123428:891..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123428 892..1770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123428.1770.1prot_H-elongata_contig123428.1770.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123428 892..1770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123428.1770.1

>prot_H-elongata_contig123428.1770.1 ID=prot_H-elongata_contig123428.1770.1|Name=mRNA_H-elongata_contig123428.1770.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
GVVGDRAGASVAGAACGLSKSGIDQELGELSELFAPDLFLVSAALDSEES
KAAVATEAGAVVAMTIEPIVQRTEDGDDGNDGARAKQSASAILASRIGAM
EPKVELSEASVESPGEAASQQQQTVAAASMFTAGGVAPSTRNTTVNAVKK
EECRCGEACCLSSQDSFSASPRKRPSEALGHPDLTPRSVVEGLGPVTGLI
PPHQPFRHRKRQRNSLTPILSAPRSVKYECSLCKEPYQSQVSSNPWWSLF
RHECPKCCRVQIPRVDAASAAVCVDSIHAVCAEEGEGAESDG*
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mRNA from alignment at H-elongata_contig123428:892..1770-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123428.1770.1 ID=mRNA_H-elongata_contig123428.1770.1|Name=mRNA_H-elongata_contig123428.1770.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=879bp|location=Sequence derived from alignment at H-elongata_contig123428:892..1770- (Himanthalia elongata Himel1 dioecious)
GGAGTCGTCGGCGACAGAGCAGGAGCATCAGTAGCAGGGGCGGCCTGTGG
CCTCTCTAAGAGCGGCATCGACCAGGAGTTGGGAGAGCTGTCGGAGCTGT
TCGCCCCCGACTTATTCCTTGTGAGTGCAGCGCTTGACTCAGAGGAGAGC
AAGGCGGCGGTTGCAACAGAAGCAGGGGCGGTGGTCGCGATGACGATCGA
GCCTATAGTCCAGCGGACCGAAGACGGTGATGATGGTAATGATGGCGCCC
GAGCAAAGCAGAGCGCCTCCGCGATTCTAGCCTCCAGGATCGGGGCGATG
GAACCAAAGGTTGAACTATCGGAAGCCTCCGTGGAATCGCCAGGGGAAGC
GGCCTCCCAGCAGCAGCAGACCGTTGCTGCAGCCTCGATGTTCACCGCCG
GAGGGGTCGCACCGTCGACAAGGAACACCACTGTCAATGCCGTCAAGAAG
GAGGAATGTCGATGCGGAGAGGCGTGCTGTCTGTCATCGCAAGACTCGTT
CTCCGCTTCCCCTCGCAAGCGACCCTCGGAAGCGCTAGGGCATCCGGATC
TCACGCCCCGAAGCGTGGTCGAGGGTTTGGGCCCGGTGACAGGCCTCATC
CCCCCGCACCAGCCGTTCCGCCACCGTAAGCGCCAGCGCAACAGCCTGAC
CCCAATTCTCTCTGCCCCGCGCAGCGTGAAGTACGAGTGCTCGCTGTGTA
AAGAGCCCTATCAGTCCCAGGTGTCGTCCAACCCTTGGTGGTCGCTGTTT
CGGCACGAGTGCCCGAAGTGCTGCCGGGTGCAGATCCCTCGGGTGGACGC
CGCAAGCGCCGCCGTCTGCGTGGACTCCATACACGCCGTGTGCGCGGAGG
AGGGCGAAGGAGCGGAAAGCGACGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig123428:892..1770-

>mRNA_H-elongata_contig123428.1770.1 ID=mRNA_H-elongata_contig123428.1770.1|Name=mRNA_H-elongata_contig123428.1770.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig123428:892..1770- (Himanthalia elongata Himel1 dioecious)
GGAGTCGTCGGCGACAGAGCAGGAGCATCAGTAGCAGGGGCGGCCTGTGG
CCTCTCTAAGAGCGGCATCGACCAGGAGTTGGGAGAGCTGTCGGAGCTGT
TCGCCCCCGACTTATTCCTTGTGAGTGCAGCGCTTGACTCAGAGGAGAGC
AAGGCGGCGGTTGCAACAGAAGCAGGGGCGGTGGTCGCGATGACGATCGA
GCCTATAGTCCAGCGGACCGAAGACGGTGATGATGGTAATGATGGCGCCC
GAGCAAAGCAGAGCGCCTCCGCGATTCTAGCCTCCAGGATCGGGGCGATG
GAACCAAAGGTTGAACTATCGGAAGCCTCCGTGGAATCGCCAGGGGAAGC
GGCCTCCCAGCAGCAGCAGACCGTTGCTGCAGCCTCGATGTTCACCGCCG
GAGGGGTCGCACCGTCGACAAGGAACACCACTGTCAATGCCGTCAAGAAG
GAGGAATGTCGATGCGGAGAGGCGTGCTGTCTGTCATCGCAAGACTCGTT
CTCCGCTTCCCCTCGCAAGCGACCCTCGGAAGCGCTAGGGCATCCGGATC
TCACGCCCCGAAGCGTGGTCGAGGGTTTGGGCCCGGTGACAGGCCTCATC
CCCCCGCACCAGCCGTTCCGCCACCGTAAGCGCCAGCGCAACAGCCTGAC
CCCAATTCTCTCTGCCCCGCGCAGCGTGAAGTACGAGTGCTCGCTGTGTA
AAGAGCCCTATCAGTCCCAGGTGTCGTCCAACCCTTGGTGGTCGCTGTTT
CGGCACGAGTGCCCGAAGTGCTGCCGGGTGCAGATCCCTCGGGTGGACGC
CGCAAGCGCCGCCGTCTGCGTGGACTCCATACACGCCGTGTGCGCGGAGG
AGGGCGAAGGAGCGGAAAGCGACGGGTAAGGAGTCGTCGGCGACAGAGCA
GGAGCATCAGTAGCAGGGGCGGCCTGTGGCCTCTCTAAGAGCGGCATCGA
CCAGGAGTTGGGAGAGCTGTCGGAGCTGTTCGCCCCCGACTTATTCCTTG
TGAGTGCAGCGCTTGACTCAGAGGAGAGCAAGGCGGCGGTTGCAACAGAA
GCAGGGGCGGTGGTCGCGATGACGATCGAGCCTATAGTCCAGCGGACCGA
AGACGGTGATGATGGTAATGATGGCGCCCGAGCAAAGCAGAGCGCCTCCG
CGATTCTAGCCTCCAGGATCGGGGCGATGGAACCAAAGGTTGAACTATCG
GAAGCCTCCGTGGAATCGCCAGGGGAAGCGGCCTCCCAGCAGCAGCAGAC
CGTTGCTGCAGCCTCGATGTTCACCGCCGGAGGGGTCGCACCGTCGACAA
GGAACACCACTGTCAATGCCGTCAAGAAGGAGGAATGTCGATGCGGAGAG
GCGTGCTGTCTGTCATCGCAAGACTCGTTCTCCGCTTCCCCTCGCAAGCG
ACCCTCGGAAGCGCTAGGGCATCCGGATCTCACGCCCCGAAGCGTGGTCG
AGGGTTTGGGCCCGGTGACAGGCCTCATCCCCCCGCACCAGCCGTTCCGC
CACCGTAAGCGCCAGCGCAACAGCCTGACCCCAATTCTCTCTGCCCCGCG
CAGCGTGAAGTACGAGTGCTCGCTGTGTAAAGAGCCCTATCAGTCCCAGG
TGTCGTCCAACCCTTGGTGGTCGCTGTTTCGGCACGAGTGCCCGAAGTGC
TGCCGGGTGCAGATCCCTCGGGTGGACGCCGCAAGCGCCGCCGTCTGCGT
GGACTCCATACACGCCGTGTGCGCGGAGGAGGGCGAAGGAGCGGAAAGCG
ACGGGTAA
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