mRNA_H-elongata_contig123309.1765.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123309.1765.1
Unique NamemRNA_H-elongata_contig123309.1765.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig123309.1765.1 vs. uniprot
Match: D7FM09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM09_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.290e-43
Identity = 83/115 (72.17%), Postives = 92/115 (80.00%), Query Frame = 1 
Query:    1 PLLRTYPLSRRGVALTALSRAFFLVPRRFTRLPLAAASRGGQGGANSHSLAEWRSAEGWYGTLTKAHSHLCADLNDDVRALPRCPFAVGLLKSKLSLLHICLGRTTAAADKSQVV 345
            P  +T  L   G AL+ L+R  +   RRFT+LP AAASRGG GG++  +LAEWRS EGWYGTL KAHSHLCADLNDDVRALPRCP AVGLLKSKLS LH CLGRTTAAADKSQV+
Sbjct:  826 PRQQTPMLITEGNALSLLNRLSWDTLRRFTKLPFAAASRGGHGGSSCQALAEWRSGEGWYGTLVKAHSHLCADLNDDVRALPRCPLAVGLLKSKLSWLHSCLGRTTAAADKSQVM 940
[Close]
BLAST of mRNA_H-elongata_contig123309.1765.1 vs. uniprot
Match: A0A6H5JV62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV62_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 4.500e-43
Identity = 82/115 (71.30%), Postives = 92/115 (80.00%), Query Frame = 1 
Query:    1 PLLRTYPLSRRGVALTALSRAFFLVPRRFTRLPLAAASRGGQGGANSHSLAEWRSAEGWYGTLTKAHSHLCADLNDDVRALPRCPFAVGLLKSKLSLLHICLGRTTAAADKSQVV 345
            P  +T  L   G AL+ L+R  + + RRFT+LP AAASRGG GG++  +L EWRS EGWYGTL KAHSHLCADLNDDVRALPRCP AVGLLKSKLS LH CLGRTTAAADKSQV+
Sbjct:  866 PRQQTPMLITEGNALSLLNRLSWDMLRRFTKLPFAAASRGGHGGSSYQALVEWRSGEGWYGTLVKAHSHLCADLNDDVRALPRCPLAVGLLKSKLSWLHSCLGRTTAAADKSQVM 980
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123309.1765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM09_ECTSI1.290e-4372.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV62_9PHAE4.500e-4371.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123309contigH-elongata_contig123309:135..1695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929725.7837882-CDS-H-elongata_contig123309:134..3291622929725.7837882-CDS-H-elongata_contig123309:134..329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123309 135..329 +
1691679134.1562784-CDS-H-elongata_contig123309:134..3291691679134.1562784-CDS-H-elongata_contig123309:134..329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123309 135..329 +
1622929725.804617-CDS-H-elongata_contig123309:1545..16951622929725.804617-CDS-H-elongata_contig123309:1545..1695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123309 1546..1695 +
1691679134.164257-CDS-H-elongata_contig123309:1545..16951691679134.164257-CDS-H-elongata_contig123309:1545..1695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123309 1546..1695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123309.1765.1prot_H-elongata_contig123309.1765.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123309 135..1695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123309.1765.1

>prot_H-elongata_contig123309.1765.1 ID=prot_H-elongata_contig123309.1765.1|Name=mRNA_H-elongata_contig123309.1765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
PLLRTYPLSRRGVALTALSRAFFLVPRRFTRLPLAAASRGGQGGANSHSL
AEWRSAEGWYGTLTKAHSHLCADLNDDVRALPRCPFAVGLLKSKLSLLHI
CLGRTTAAADKSQVV
back to top

mRNA from alignment at H-elongata_contig123309:135..1695+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123309.1765.1 ID=mRNA_H-elongata_contig123309.1765.1|Name=mRNA_H-elongata_contig123309.1765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1561bp|location=Sequence derived from alignment at H-elongata_contig123309:135..1695+ (Himanthalia elongata Himel1 dioecious)
CCTCTCCTCCGTACCTACCCCCTTTCACGGCGCGGTGTCGCTCTTACGGC
ACTCTCCCGCGCCTTTTTTCTCGTACCCAGGCGCTTCACGCGGCTCCCGC
TTGCCGCGGCCAGCCGTGGGGGACAGGGAGGCGCTAACTCCCACTCGTTG
GCGGAATGGCGAAGCGCAGAGGGGTGGTACGGGACGCTAACGAAGGTCAG
TTTCCTCCGGGGATGGGTGATCATCATCCTCCCAGAGGATATGTATAAGT
GCCCGCCCTGGAGTAAGTGATTATTGTTCCCCGAGGATGAGTGGTGAGTT
TTCACCCCCGGGGATGGGTGATGAATGCCCCCCCCCCAGGGAATGGGTGA
TGCATGTTCCCCCCCAGGGGGTGGGTGTTGAGTCCCTGCCAAGGGAAGCA
TTGTTGAACCGTGGGATGGATGATGAGTGTCCCTCCTGGGGTAAGTCTAC
CCCGAGCGTAGGAATGGGTATCCCCCAGGGGATGGGTAATGAGTATATCC
AGGGGATGGGTAATGGGTATCCCCCAGGGATGGTTAATGAGTATTCCCCC
AGGGATGAGTATATCCCCCGGGCAAAGGTTGATAAACGTACCGCGGGGAT
GGGTGATGAATATCCCCGCTTGGCGCTTTTCAGTAATAAGGAGAAAGCGA
ATACGAACAAAAAGGCTTGCGACGAGCGCGCTATCTGTTCGCTGTGGAAG
GGATTGACGGTTGAGTTATATGGTGGAGGGGAATGGAGAAGGGGGTTGCT
TGTGTTAACCCATGGCGTATCTTACGAGATGTAGTCCCACGCATCCCAAA
TATCAAATCCCGGGATGGAGCGATCTGTCAGCTTTGTAGTCATGATGGTC
ATGGTCACCCTTGCGCTTACGACGTCAAACGGGTGCCATGCCGTGGGTCT
AATTGGACACACCGGGTAACCAAATATTGCACTTTCAGCAGGCGCATCGA
CTATACTATACTATAATATACTGAACTATACTATACTATACTATACTATA
CTTCCTGGCGGAGTAATCTATGGTTGCTCTAGCAATATGGCGTTCACCAG
GCAAACCGCCGTTTCACCCCTCTGACCGGGGTCTCTGAGCTCACAGGATA
TACTGCCTGAGCTCTATGCCACAAGAGACACTTCTTGCCTTGACCAACCC
CGCCTCTTGCCTTGATATGGGAGGGGGGGGGAGTCTATCCCCTGTGTAGT
TTGCTAGCACCGGCTCTGATTGGTCTATATCTAATAGTTAAAGTTTATCC
GTTCGGCGCAACACAGACGCCCTCTCCTCCCATCCCATCACTACCCCGCG
CTCACAATAATTATGTTGTATTTTCTCTCTTTACTGTGTCCTGCCCCCGT
TCCCCGTCCCCCGTCCCCCGTCCCCGGTGGGATCACGATAACGAAATCCA
CCAACTCACAGGCGCACTCCCACCTGTGCGCCGACCTGAACGACGACGTA
CGGGCGCTGCCCCGGTGCCCCTTCGCGGTGGGGCTCCTCAAGAGCAAGCT
CAGCCTGCTGCACATATGCCTCGGGAGGACCACGGCTGCGGCAGACAAGT
CTCAAGTGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig123309:135..1695+

>mRNA_H-elongata_contig123309.1765.1 ID=mRNA_H-elongata_contig123309.1765.1|Name=mRNA_H-elongata_contig123309.1765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig123309:135..1695+ (Himanthalia elongata Himel1 dioecious)
CCTCTCCTCCGTACCTACCCCCTTTCACGGCGCGGTGTCGCTCTTACGGC
ACTCTCCCGCGCCTTTTTTCTCGTACCCAGGCGCTTCACGCGGCTCCCGC
TTGCCGCGGCCAGCCGTGGGGGACAGGGAGGCGCTAACTCCCACTCGTTG
GCGGAATGGCGAAGCGCAGAGGGGTGGTACGGGACGCTAACGAAGCCTCT
CCTCCGTACCTACCCCCTTTCACGGCGCGGTGTCGCTCTTACGGCACTCT
CCCGCGCCTTTTTTCTCGTACCCAGGCGCTTCACGCGGCTCCCGCTTGCC
GCGGCCAGCCGTGGGGGACAGGGAGGCGCTAACTCCCACTCGTTGGCGGA
ATGGCGAAGCGCAGAGGGGTGGTACGGGACGCTAACGAAGGCGCACTCCC
ACCTGTGCGCCGACCTGAACGACGACGTACGGGCGCTGCCCCGGTGCCCC
TTCGCGGTGGGGCTCCTCAAGAGCAAGCTCAGCCTGCTGCACATATGCCT
CGGGAGGACCACGGCTGCGGCAGACAAGTCTCAAGTGGTGGCGCACTCCC
ACCTGTGCGCCGACCTGAACGACGACGTACGGGCGCTGCCCCGGTGCCCC
TTCGCGGTGGGGCTCCTCAAGAGCAAGCTCAGCCTGCTGCACATATGCCT
CGGGAGGACCACGGCTGCGGCAGACAAGTCTCAAGTGGTG
back to top