mRNA_H-elongata_contig12330.1764.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12330.1764.1
Unique NamemRNA_H-elongata_contig12330.1764.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.080e-10
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   79 SGIAFAVQSQD-----ARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFH-----GRSDEPITLCDVSHVPDLKFNLFSFHKVQQ 372
            SG  FA+ +Q+      R  FW  DSGA+    + + +M+ +R  P GK  +   +GT LRV+ +G +++ FH     G  D  + + DV  VP + FNLFS H  Q+
Sbjct:  620 SGNGFALSAQNPLSRFGREKFW-ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQR 726          
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: UPI00073A387C (uncharacterized protein LOC107062574 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=UPI00073A387C)

HSP 1 Score: 55.5 bits (132), Expect = 2.230e-6
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   61 GESVNFSGIAFAVQSQDARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
            G  + +SG  F V +     N WI DSGAS HM  + SK +   TP      +   +  R+ V Y GN+++  +      +TL +V HVPD K+NL S HK+
Sbjct:  412 GTILKYSGSCFTVYNS----NVWIIDSGASEHMCFN-SKSFMSLTPLPIPLNISLPNSFRITVTYTGNVNILPN------LTLYNVLHVPDFKYNLLSVHKL 502          
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A2I0VFZ4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VFZ4_9ASPA)

HSP 1 Score: 55.1 bits (131), Expect = 3.060e-6
Identity = 31/101 (30.69%), Postives = 48/101 (47.52%), Query Frame = 1
Query:   64 ESVNFSGIAFAVQSQDARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
            ++ N +  A    S  A NN W  DSGAS H+TN    +  + +P  G   +   DG  + +   G   +    R    +TL  + H+P+LK+NL S  K+
Sbjct:  298 QTTNTNNRAMVAASDSATNNNWFLDSGASAHLTNSLDNL-SIASPYQGSDSITIGDGRSMSIANSGTGSLPIPARK---LTLDQILHIPELKYNLLSISKL 394          
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A834WY56_9FABA (Putative LRR receptor-like serine/threonine-protein kinase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WY56_9FABA)

HSP 1 Score: 53.1 bits (126), Expect = 1.370e-5
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   94 AVQSQDARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKVQQ 372
            A+ +    N+ WI DSGAS HMT +TS ++    P     +V  +DGT  +V  IG++ +       + ITL +V HVP L  NL S  K+ Q
Sbjct:  101 AMTTSRTPNDSWIVDSGASDHMTGNTS-LFSKLAPCKTSLQVKIADGTMAKVLGIGSVKIC------DTITLLNVLHVPTLACNLLSISKLTQ 186          
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A336MT82_CULSO (CSON006917 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MT82_CULSO)

HSP 1 Score: 52.8 bits (125), Expect = 1.870e-5
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  121 NFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLC--DVSHVPDLKFNLFSFHKV 366
            N W  DSGAS HM ND      +++    K  ++ +DG +L    IG++ +     SD+ + +   DV HVP+LK NL S HK+
Sbjct:  269 NNWFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350          
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A336N465_CULSO (CSON011514 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336N465_CULSO)

HSP 1 Score: 52.8 bits (125), Expect = 1.950e-5
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  121 NFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLC--DVSHVPDLKFNLFSFHKV 366
            N W  DSGAS HM ND      +++    K  ++ +DG +L    IG++ +     SD+ + +   DV HVP+LK NL S HK+
Sbjct:  269 NNWFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350          
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A2N9ERC5_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ERC5_FAGSY)

HSP 1 Score: 52.8 bits (125), Expect = 1.990e-5
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1
Query:  118 NNFWIGDSGASCHMTNDTSKMYHVRTP--PFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
            N+ W+ DSGAS HMT ++S + ++  P  PF    V  ++GT+  V+ IG +       S   +T  +V H+P+  FNL S HK+
Sbjct:  491 NSSWVIDSGASDHMTGNSSLLSNISDPCSPFS---VTVANGTKTPVQGIGTV-------STPNLTFSNVLHLPEFPFNLLSVHKL 565          
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A803LZV8_CHEQI (Retrotran_gag_3 domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LZV8_CHEQI)

HSP 1 Score: 52.0 bits (123), Expect = 3.330e-5
Identity = 38/115 (33.04%), Postives = 52/115 (45.22%), Query Frame = 1
Query:   76 FSGIAFAVQSQDARNNF------------------WIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
            FS I  A+QSQ+A N                    WI DSGA+ H+ ++ S     +        +  +DG  + VE+IG +        D  I L +V HVP LKFNL S HK+
Sbjct:  332 FSSILKALQSQNAENPAESQAHVASTCLLTCSNAKWIVDSGATDHICSNLSLFESYKCFDKTPSTITIADGKHVTVEHIGTVQF------DNGIVLQNVLHVPGLKFNLISTHKL 440          
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A803LD36_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LD36_CHEQI)

HSP 1 Score: 51.6 bits (122), Expect = 4.580e-5
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  127 WIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
            W+ DSGA+ H+ +D + ++   TP    + +   DG+R+ V+  G + +      ++ I+L +V HVPD KFNL S HK+
Sbjct:  277 WLLDSGATDHIFSDIA-LFAKLTPVLTPYYITIPDGSRILVKNTGVVKL------NDEISLLNVLHVPDFKFNLISVHKL 349          
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A1S3Y3U3_TOBAC (uncharacterized protein LOC107771880 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3Y3U3_TOBAC)

HSP 1 Score: 51.6 bits (122), Expect = 4.850e-5
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 1
Query:   61 GESVNFSGIAFA----------VQSQDARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
            G +VNF+GI+             +  ++R N WI DSGA+ HMT +TS + ++RT  +  + V    G +++V  IG  D+    R     +L  V  VP  KFNL S H +
Sbjct:  142 GGAVNFAGISACSTHFDSSDQLCEKSNSRANSWILDSGATNHMTYNTSLLINIRTLVY-PYLVTPPKGYKVKVTLIG--DIILSPR----FSLRKVLFVPSFKFNLISVHSL 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K3I1_9PHAE2.080e-1035.19Integrase catalytic domain-containing protein n=5 ... [more]
UPI00073A387C2.230e-636.27uncharacterized protein LOC107062574 n=1 Tax=Solan... [more]
A0A2I0VFZ4_9ASPA3.060e-630.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A834WY56_9FABA1.370e-537.63Putative LRR receptor-like serine/threonine-protei... [more]
A0A336MT82_CULSO1.870e-536.90CSON006917 protein n=1 Tax=Culicoides sonorensis T... [more]
A0A336N465_CULSO1.950e-536.90CSON011514 protein n=1 Tax=Culicoides sonorensis T... [more]
A0A2N9ERC5_FAGSY1.990e-536.47Integrase catalytic domain-containing protein n=2 ... [more]
A0A803LZV8_CHEQI3.330e-533.04Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
A0A803LD36_CHEQI4.580e-535.00Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A1S3Y3U3_TOBAC4.850e-533.93uncharacterized protein LOC107771880 n=1 Tax=Nicot... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12330contigH-elongata_contig12330:6..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929725.7338939-CDS-H-elongata_contig12330:5..3801622929725.7338939-CDS-H-elongata_contig12330:5..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12330 6..380 -
1691679134.1480136-CDS-H-elongata_contig12330:5..3801691679134.1480136-CDS-H-elongata_contig12330:5..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12330 6..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12330.1764.1prot_H-elongata_contig12330.1764.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12330 6..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12330.1764.1

>prot_H-elongata_contig12330.1764.1 ID=prot_H-elongata_contig12330.1764.1|Name=mRNA_H-elongata_contig12330.1764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
SNSSWSSLTDRAVMTQFCTPGESVNFSGIAFAVQSQDARNNFWIGDSGAS
CHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEP
ITLCDVSHVPDLKFNLFSFHKVQQT
back to top

mRNA from alignment at H-elongata_contig12330:6..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12330.1764.1 ID=mRNA_H-elongata_contig12330.1764.1|Name=mRNA_H-elongata_contig12330.1764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig12330:6..380- (Himanthalia elongata Himel1 dioecious)
TCCAACTCGTCCTGGAGCTCCTTGACCGACCGGGCTGTGATGACCCAGTT CTGTACCCCAGGCGAGTCTGTGAATTTTAGTGGTATAGCATTTGCAGTGC AATCGCAGGATGCTCGTAACAACTTTTGGATAGGTGACAGTGGCGCATCG TGTCACATGACGAATGACACATCAAAAATGTATCATGTGAGGACTCCTCC TTTTGGTAAACATGAAGTAATGACTAGTGATGGAACGAGATTAAGGGTAG AATATATCGGTAACATCGACGTATTTTTTCATGGGAGAAGCGATGAACCG ATAACGTTATGCGATGTATCGCACGTACCGGATTTGAAGTTCAATCTTTT TTCGTTTCATAAGGTACAGCAAACA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12330:6..380-

>mRNA_H-elongata_contig12330.1764.1 ID=mRNA_H-elongata_contig12330.1764.1|Name=mRNA_H-elongata_contig12330.1764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig12330:6..380- (Himanthalia elongata Himel1 dioecious)
TCCAACTCGTCCTGGAGCTCCTTGACCGACCGGGCTGTGATGACCCAGTT
CTGTACCCCAGGCGAGTCTGTGAATTTTAGTGGTATAGCATTTGCAGTGC
AATCGCAGGATGCTCGTAACAACTTTTGGATAGGTGACAGTGGCGCATCG
TGTCACATGACGAATGACACATCAAAAATGTATCATGTGAGGACTCCTCC
TTTTGGTAAACATGAAGTAATGACTAGTGATGGAACGAGATTAAGGGTAG
AATATATCGGTAACATCGACGTATTTTTTCATGGGAGAAGCGATGAACCG
ATAACGTTATGCGATGTATCGCACGTACCGGATTTGAAGTTCAATCTTTT
TTCGTTTCATAAGGTACAGCAAACATCCAACTCGTCCTGGAGCTCCTTGA
CCGACCGGGCTGTGATGACCCAGTTCTGTACCCCAGGCGAGTCTGTGAAT
TTTAGTGGTATAGCATTTGCAGTGCAATCGCAGGATGCTCGTAACAACTT
TTGGATAGGTGACAGTGGCGCATCGTGTCACATGACGAATGACACATCAA
AAATGTATCATGTGAGGACTCCTCCTTTTGGTAAACATGAAGTAATGACT
AGTGATGGAACGAGATTAAGGGTAGAATATATCGGTAACATCGACGTATT
TTTTCATGGGAGAAGCGATGAACCGATAACGTTATGCGATGTATCGCACG
TACCGGATTTGAAGTTCAATCTTTTTTCGTTTCATAAGGTACAGCAAACA
back to top