prot_H-elongata_contig12325.1757.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12325.1757.1
Unique Nameprot_H-elongata_contig12325.1757.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length334
Homology
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BLAST of mRNA_H-elongata_contig12325.1757.1 vs. uniprot
Match: D8LLH7_ECTSI (PINc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH7_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.160e-53
Identity = 136/279 (48.75%), Postives = 173/279 (62.01%), Query Frame = 0 
Query:   72 RAGKSCPPPREGKPRSSGDKDDSRGSGGNVGNTPTPSQNLDEDKLAEIMNKINALDLNATTKSTLKKAPGDVAS-------KAYLTREEYKAAETAGNVV-YKGKK--TVDELYAGGKAYNPTTRRWIKVENEKKKAAAESAPVLLANVEMLENTVKLLTERSQLLETKAEILKDQSTGPTATLGTPTAPKLIVFDTNCFMHGLGSIKCRIADIAARQPDTSVLIPKAVLTELDGLK---KNEMRGFSAREASRY---LVSLPQTCEGREFTVARFQED 334
            RAGKSCPPP   K R     D S G+        +P Q  D D++AE+ +++ AL+++A   S   +    VA+       KAYL+ EEYK A  +G +  YKG K  TVD+ YA G AYNPTTRRWIKV  ++KK A E+ P LLA +E++E+  KL T+RSQLLETK E +K +    T +L  PTAP L+ FDTN  +H L    CR++DIA RQ DTSVLIPKAVLTELD LK   ++E    SA++A+RY   LV  P    GREF V R QED
Sbjct:  278 RAGKSCPPPSAEKRR-----DASAGARATTA-LMSPEQERD-DEIAELASQLTALEIDAGKGSVDDEGKEKVANGGDAGKGKAYLSLEEYKEATASGEIKPYKGTKYQTVDDRYADGWAYNPTTRRWIKVACQEKKDAIEALPALLARLELMESRDKLATQRSQLLETKVEEIKKKK--DTVSLAMPTAPVLVAFDTNWLIHRLADTMCRVSDIAGRQKDTSVLIPKAVLTELDRLKTRGRDEATRSSAQKANRYFRGLVEKPLE-RGREFPVVRVQED 546
[Close]
BLAST of mRNA_H-elongata_contig12325.1757.1 vs. uniprot
Match: A0A6H5JRN9_9PHAE (PINc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN9_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 5.920e-50
Identity = 121/238 (50.84%), Postives = 156/238 (65.55%), Query Frame = 0 
Query:  113 EDKLAEIMNKINALDLNA-----TTKSTLKKAPGDVASK--AYLTREEYKAAETAGNVV-YKGKK--TVDELYAGGKAYNPTTRRWIKVENEKKKAAAESAPVLLANVEMLENTVKLLTERSQLLETKAEILKDQSTGPTATLGTPTAPKLIVFDTNCFMHGLGSIKCRIADIAARQPDTSVLIPKAVLTELDGLK---KNEMRGFSAREASRY---LVSLPQTCEGREFTVARFQED 334
            +D++AE+ +++ AL+L+A       K   K A GD A K  AYL+ +EYK A  +G +  YKG K  TVD+ YA G AYNPTTRRWIKV  ++KK A E+ P LLA +E++E+  KL T+RSQLLETK E +K +    T +L  PTAP L+ FDTN  +H L    CR++DIA RQ DTSVLIPKAVLTELD LK   ++E    SA++A+RY   LV  P    GREF V R Q+D
Sbjct:  549 DDEIAELASQLTALELDAGKGSVADKGKEKVADGDDAGKGKAYLSLKEYKEATASGEIKPYKGTKYQTVDDRYADGWAYNPTTRRWIKVACQEKKDAIEALPALLARLELMESRDKLATQRSQLLETKVEEIKKKK--DTVSLAVPTAPVLVAFDTNWLIHRLADTMCRVSDIAGRQKDTSVLIPKAVLTELDRLKTRGRDEATRSSAQKANRYFRGLVEKPLE-RGREFPVVRVQDD 783
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12325.1757.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLH7_ECTSI1.160e-5348.75PINc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JRN9_9PHAE5.920e-5050.84PINc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 210..237
NoneNo IPR availableGENE3D3.40.50.1010coord: 248..328
e-value: 3.1E-11
score: 45.2
IPR002716PIN domainPFAMPF13638PIN_4coord: 254..324
e-value: 3.8E-8
score: 33.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12325contigH-elongata_contig12325:1..2287 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12325.1757.1mRNA_H-elongata_contig12325.1757.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12325 1..2287 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12325.1757.1 ID=prot_H-elongata_contig12325.1757.1|Name=mRNA_H-elongata_contig12325.1757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=334bp
RGETRRPSNTSNGFKDSDERARDDSSIRGREGRHDSHRAGRDGTNRSNGR
PRGRRGGKNEEADPESRKWHVRAGKSCPPPREGKPRSSGDKDDSRGSGGN
VGNTPTPSQNLDEDKLAEIMNKINALDLNATTKSTLKKAPGDVASKAYLT
REEYKAAETAGNVVYKGKKTVDELYAGGKAYNPTTRRWIKVENEKKKAAA
ESAPVLLANVEMLENTVKLLTERSQLLETKAEILKDQSTGPTATLGTPTA
PKLIVFDTNCFMHGLGSIKCRIADIAARQPDTSVLIPKAVLTELDGLKKN
EMRGFSAREASRYLVSLPQTCEGREFTVARFQED
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002716PIN_dom