prot_H-elongata_contig123069.1752.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig123069.1752.1
Unique Nameprot_H-elongata_contig123069.1752.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length96
Homology
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.420e-37
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 0
Query:    3 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 86
            VRLPGK+SK+PQ+F FGTPY+EIRD L R +EALFRRN VLGLLER+A TKRAPERWQ L+    ASFDVVVCFESRVFDLVVE
Sbjct:   22 VRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVE 105          
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: D8LTB5_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB5_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 6.860e-37
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 0
Query:    3 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEG 87
            VRLPGK+SK+PQ+F FGTPY+EIRD L R +EALFRRN VLGLLER+A TKRAPERWQ L+ +  ASFDVVVCFESRVFDLVVEG
Sbjct:  178 VRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEG 262          
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: D8LSD4_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD4_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.450e-24
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 0
Query:    3 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEGT 88
            VRLPGK+  +P+ F FGTPY +I D L   DEALF +N +L L+ R+A+ K AP+R+Q++E  + A FDVV+CFE+RVF LVVEGT
Sbjct:  140 VRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEGT 225          
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A835Z2K1_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.530e-24
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 0
Query:    3 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 86
            V+LPG++   P  F FGTPY+E+ D L   D+ L+ RN VL LL RDA TKR PERWQDL S    ++DVV+CFE+R+FD+ V+
Sbjct:   33 VKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQ 116          
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A067BH95_SAPPC (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BH95_SAPPC)

HSP 1 Score: 92.4 bits (228), Expect = 4.530e-22
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 0
Query:    1 SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEGT 88
            ++VR PG++   P  + F TPY  +   L   +EALFR N VL +LERD +TK+AP++WQD  + + A  DVVVCFE R+FD+V+EG+
Sbjct:   38 NKVRFPGRSRYEPHIYEFFTPYEVMYRELKAENEALFRHNGVLAMLERDILTKKAPQKWQDNSTTDLAQLDVVVCFEDRIFDIVLEGS 125          
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.650e-21
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 0
Query:    3 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 86
            VRLPGK+  +P+ F FGTPY +I D L   DEALF +N +L L+ R+A+ K AP+R+Q++E  + A FDVV+CFE+RVF LVVE
Sbjct:  236 VRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVE 319          
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: B7G244_PHATC (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G244_PHATC)

HSP 1 Score: 90.5 bits (223), Expect = 7.170e-21
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0
Query:    1 SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRL--DEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 86
            ++VRLPG+ +  P+ F FGTPY E+   +     D A F RN VL L  R A  KRAPERWQD+ S++AA  DVV+ FE R+FD V+E
Sbjct:   38 TQVRLPGRTAMEPRIFKFGTPYEEMYQQMSSTAEDAAYFERNGVLQLCSRGAAVKRAPERWQDISSEDAAKHDVVIAFEERIFDAVIE 125          
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A425CYI4_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A425CYI4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.070e-20
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0
Query:    3 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 86
            VR PG N   P+ F F TPY  +   L   +E LFRRN VL +LERD +TK+AP++WQ     E A  DVV+CFE R+FD+V+E
Sbjct:    2 VRFPGPNPYEPRIFPFFTPYEVMYRELKSENEQLFRRNGVLAMLERDIITKKAPQKWQGNSMDELAKLDVVLCFEDRIFDIVME 85          
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A7R9WPY3_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WPY3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.140e-20
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    1 SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRL--DEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEGTFVKH 92
            ++VRLPGKNS  P+ F FGTPY  + +N+     DEA F RN VL L +R A  KR P+RWQD+ S+     DVV+ FE R+FD VVE   ++ 
Sbjct:  132 TQVRLPGKNSMEPKVFKFGTPYEHMYNNMCATPEDEAFFARNGVLQLCKRGAAVKRGPQRWQDMPSEWIRQHDVVIAFEERIFDAVVEDLQIRE 225          
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A5D6YDL3_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDL3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.860e-20
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 0
Query:    1 SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 86
            ++VR PG +   P+ F F TPY  + D L R +  LF RN VL +LERD +TK+ P+RWQDL  +E    DVV+CF+ R+F++V+E
Sbjct:   52 NKVRFPGPSRYDPRIFEFFTPYQRMYDELKRENADLFHRNGVLAMLERDILTKKCPQRWQDLSVRELRGLDVVLCFDDRIFEIVLE 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLZ3_9PHAE1.420e-3778.57RNA polymerase II subunit A C-terminal domain phos... [more]
D8LTB5_ECTSI6.860e-3778.82Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
D8LSD4_ECTSI2.450e-2456.98RNA polymerase II subunit A C-terminal domain phos... [more]
A0A835Z2K1_9STRA7.530e-2454.76RNA polymerase II subunit A C-terminal domain phos... [more]
A0A067BH95_SAPPC4.530e-2248.86RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5KZG9_9PHAE1.650e-2155.95Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
B7G244_PHATC7.170e-2151.14RNA polymerase II subunit A C-terminal domain phos... [more]
A0A425CYI4_9STRA4.070e-2051.19RNA polymerase II subunit A C-terminal domain phos... [more]
A0A7R9WPY3_9STRA4.140e-2048.94RNA polymerase II subunit A C-terminal domain phos... [more]
A0A5D6YDL3_9STRA6.860e-2047.67RNA polymerase II subunit A C-terminal domain phos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2300coord: 25..92
e-value: 2.1E-7
score: 32.7
NoneNo IPR availablePANTHERPTHR20383:SF9RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE SSU72coord: 2..87
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 1..87
e-value: 1.9E-24
score: 86.3
IPR006811RNA polymerase II subunit APANTHERPTHR20383FAMILY NOT NAMEDcoord: 2..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123069contigH-elongata_contig123069:681..968 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123069.1752.1mRNA_H-elongata_contig123069.1752.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig123069 681..968 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig123069.1752.1 ID=prot_H-elongata_contig123069.1752.1|Name=mRNA_H-elongata_contig123069.1752.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDA
VTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEGTFVKHLIIF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA