mRNA_H-elongata_contig123069.1752.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123069.1752.1
Unique NamemRNA_H-elongata_contig123069.1752.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.420e-37
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    7 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 258
            VRLPGK+SK+PQ+F FGTPY+EIRD L R +EALFRRN VLGLLER+A TKRAPERWQ L+    ASFDVVVCFESRVFDLVVE
Sbjct:   22 VRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVE 105
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: D8LTB5_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB5_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 6.860e-37
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    7 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEG 261
            VRLPGK+SK+PQ+F FGTPY+EIRD L R +EALFRRN VLGLLER+A TKRAPERWQ L+ +  ASFDVVVCFESRVFDLVVEG
Sbjct:  178 VRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEG 262
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: D8LSD4_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD4_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.450e-24
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    7 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEGT 264
            VRLPGK+  +P+ F FGTPY +I D L   DEALF +N +L L+ R+A+ K AP+R+Q++E  + A FDVV+CFE+RVF LVVEGT
Sbjct:  140 VRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEGT 225
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A835Z2K1_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.530e-24
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    7 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 258
            V+LPG++   P  F FGTPY+E+ D L   D+ L+ RN VL LL RDA TKR PERWQDL S    ++DVV+CFE+R+FD+ V+
Sbjct:   33 VKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQ 116
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A067BH95_SAPPC (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BH95_SAPPC)

HSP 1 Score: 92.4 bits (228), Expect = 4.530e-22
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEGT 264
            ++VR PG++   P  + F TPY  +   L   +EALFR N VL +LERD +TK+AP++WQD  + + A  DVVVCFE R+FD+V+EG+
Sbjct:   38 NKVRFPGRSRYEPHIYEFFTPYEVMYRELKAENEALFRHNGVLAMLERDILTKKAPQKWQDNSTTDLAQLDVVVCFEDRIFDIVLEGS 125
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.650e-21
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    7 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 258
            VRLPGK+  +P+ F FGTPY +I D L   DEALF +N +L L+ R+A+ K AP+R+Q++E  + A FDVV+CFE+RVF LVVE
Sbjct:  236 VRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVE 319
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: B7G244_PHATC (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G244_PHATC)

HSP 1 Score: 90.5 bits (223), Expect = 7.170e-21
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRL--DEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 258
            ++VRLPG+ +  P+ F FGTPY E+   +     D A F RN VL L  R A  KRAPERWQD+ S++AA  DVV+ FE R+FD V+E
Sbjct:   38 TQVRLPGRTAMEPRIFKFGTPYEEMYQQMSSTAEDAAYFERNGVLQLCSRGAAVKRAPERWQDISSEDAAKHDVVIAFEERIFDAVIE 125
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A425CYI4_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A425CYI4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.070e-20
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    7 VRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 258
            VR PG N   P+ F F TPY  +   L   +E LFRRN VL +LERD +TK+AP++WQ     E A  DVV+CFE R+FD+V+E
Sbjct:    2 VRFPGPNPYEPRIFPFFTPYEVMYRELKSENEQLFRRNGVLAMLERDIITKKAPQKWQGNSMDELAKLDVVLCFEDRIFDIVME 85
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A7R9WPY3_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WPY3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.140e-20
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRL--DEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEGTFVKH 276
            ++VRLPGKNS  P+ F FGTPY  + +N+     DEA F RN VL L +R A  KR P+RWQD+ S+     DVV+ FE R+FD VVE   ++ 
Sbjct:  132 TQVRLPGKNSMEPKVFKFGTPYEHMYNNMCATPEDEAFFARNGVLQLCKRGAAVKRGPQRWQDMPSEWIRQHDVVIAFEERIFDAVVEDLQIRE 225
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BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Match: A0A5D6YDL3_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDL3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.860e-20
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDAVTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVE 258
            ++VR PG +   P+ F F TPY  + D L R +  LF RN VL +LERD +TK+ P+RWQDL  +E    DVV+CF+ R+F++V+E
Sbjct:   52 NKVRFPGPSRYDPRIFEFFTPYQRMYDELKRENADLFHRNGVLAMLERDILTKKCPQRWQDLSVRELRGLDVVLCFDDRIFEIVLE 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123069.1752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLZ3_9PHAE1.420e-3778.57RNA polymerase II subunit A C-terminal domain phos... [more]
D8LTB5_ECTSI6.860e-3778.82Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
D8LSD4_ECTSI2.450e-2456.98RNA polymerase II subunit A C-terminal domain phos... [more]
A0A835Z2K1_9STRA7.530e-2454.76RNA polymerase II subunit A C-terminal domain phos... [more]
A0A067BH95_SAPPC4.530e-2248.86RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5KZG9_9PHAE1.650e-2155.95Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
B7G244_PHATC7.170e-2151.14RNA polymerase II subunit A C-terminal domain phos... [more]
A0A425CYI4_9STRA4.070e-2051.19RNA polymerase II subunit A C-terminal domain phos... [more]
A0A7R9WPY3_9STRA4.140e-2048.94RNA polymerase II subunit A C-terminal domain phos... [more]
A0A5D6YDL3_9STRA6.860e-2047.67RNA polymerase II subunit A C-terminal domain phos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123069contigH-elongata_contig123069:681..968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.9e-30
Seed eggNOG ortholog2880.D8LTB5
Preferred nameSSU72
KEGG koko:K15544
KEGG Pathwayko03015,map03015
GOsGO:0001173,GO:0001174,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008420,GO:0009058,GO:0009059,GO:0009302,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0016070,GO:0016071,GO:0016074,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0023052,GO:0030846,GO:0030847,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043244,GO:0043412,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045839,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060623,GO:0065007,GO:0070013,GO:0070940,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902340,GO:1903379,GO:1903506,GO:1905213,GO:2000112,GO:2001141,GO:2001251
EggNOG free text desc.RNA polymerase II subunit A C-terminal domain phosphatase
EggNOG OGsCOG5211@1,KOG2424@2759
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase II subunit A
Ec32 orthologEc-12_005940.1
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929724.1843674-CDS-H-elongata_contig123069:680..9681622929724.1843674-CDS-H-elongata_contig123069:680..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123069 681..968 +
1691679133.5467367-CDS-H-elongata_contig123069:680..9681691679133.5467367-CDS-H-elongata_contig123069:680..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123069 681..968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123069.1752.1prot_H-elongata_contig123069.1752.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123069 681..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123069.1752.1

>prot_H-elongata_contig123069.1752.1 ID=prot_H-elongata_contig123069.1752.1|Name=mRNA_H-elongata_contig123069.1752.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
SRVRLPGKNSKTPQAFAFGTPYLEIRDNLVRLDEALFRRNRVLGLLERDA
VTKRAPERWQDLESQEAASFDVVVCFESRVFDLVVEGTFVKHLIIF
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mRNA from alignment at H-elongata_contig123069:681..968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123069.1752.1 ID=mRNA_H-elongata_contig123069.1752.1|Name=mRNA_H-elongata_contig123069.1752.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig123069:681..968+ (Himanthalia elongata Himel1 dioecious)
AGTCGAGTAAGGCTGCCAGGTAAGAATTCCAAGACCCCGCAAGCATTCGC
ATTTGGAACTCCGTACCTCGAGATCCGCGACAACCTCGTTCGCCTAGACG
AAGCGCTGTTTCGACGTAACAGAGTGTTGGGCTTACTCGAGAGAGATGCT
GTTACCAAGCGCGCCCCGGAGCGATGGCAGGACCTCGAAAGTCAAGAAGC
GGCCTCGTTCGACGTGGTGGTTTGCTTCGAGAGCCGCGTCTTCGATCTGG
TCGTGGAAGGTACATTTGTCAAGCACTTGATCATATTC
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Coding sequence (CDS) from alignment at H-elongata_contig123069:681..968+

>mRNA_H-elongata_contig123069.1752.1 ID=mRNA_H-elongata_contig123069.1752.1|Name=mRNA_H-elongata_contig123069.1752.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig123069:681..968+ (Himanthalia elongata Himel1 dioecious)
AGTCGAGTAAGGCTGCCAGGTAAGAATTCCAAGACCCCGCAAGCATTCGC
ATTTGGAACTCCGTACCTCGAGATCCGCGACAACCTCGTTCGCCTAGACG
AAGCGCTGTTTCGACGTAACAGAGTGTTGGGCTTACTCGAGAGAGATGCT
GTTACCAAGCGCGCCCCGGAGCGATGGCAGGACCTCGAAAGTCAAGAAGC
GGCCTCGTTCGACGTGGTGGTTTGCTTCGAGAGCCGCGTCTTCGATCTGG
TCGTGGAAGGTACATTTGTCAAGCACTTGATCATATTCAGTCGAGTAAGG
CTGCCAGGTAAGAATTCCAAGACCCCGCAAGCATTCGCATTTGGAACTCC
GTACCTCGAGATCCGCGACAACCTCGTTCGCCTAGACGAAGCGCTGTTTC
GACGTAACAGAGTGTTGGGCTTACTCGAGAGAGATGCTGTTACCAAGCGC
GCCCCGGAGCGATGGCAGGACCTCGAAAGTCAAGAAGCGGCCTCGTTCGA
CGTGGTGGTTTGCTTCGAGAGCCGCGTCTTCGATCTGGTCGTGGAAGGTA
CATTTGTCAAGCACTTGATCATATTC
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