mRNA_H-elongata_contig122990.1750.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122990.1750.1
Unique NamemRNA_H-elongata_contig122990.1750.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A6H5K2Z4_9PHAE (TMF_TATA_bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.700e-24
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 LHLRLEEMHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 204
            L  RLE + A RDALTEEVTSLGRRNTELEALAKA P+LRDQAL+LQ KN VLLDLLGEKTE+LEA+Q
Sbjct: 1263 LQQRLEAVQATRDALTEEVTSLGRRNTELEALAKAVPLLRDQALELQDKNGVLLDLLGEKTEDLEAVQ 1330
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BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: D7G6G4_ECTSI (TMF_TATA_bd domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G4_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.700e-24
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 LHLRLEEMHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 204
            L  RLE + A RDALTEEVTSLGRRNTELEALAKA P+LRDQAL+LQ KN VLLDLLGEKTE+LEA+Q
Sbjct: 1272 LQQRLEAVQATRDALTEEVTSLGRRNTELEALAKAVPLLRDQALELQDKNGVLLDLLGEKTEDLEAVQ 1339
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BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A7S2BWU5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWU5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.490e-11
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   10 RLEEMHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 204
            RL ++  VRDALT EV  LG+RN +L   A  A  +  +A   + KN VLL+LLGEKTEELE +Q
Sbjct:   43 RLRQVEEVRDALTSEVLELGKRNQDLSKAASKAATMERKASAFKKKNDVLLELLGEKTEELEDLQ 107
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BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A835ZDC3_9STRA (TATA element modulatory factor 1 TATA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDC3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.790e-10
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    1 LHLRLEEMHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAM 201
            L  R       RDAL +EV +LGRR+ ELEA     P   +QA +L  KN VLL+LLGEK EE+E +
Sbjct:   18 LQRRAAAAETERDALADEVAALGRRSAELEAALSTLPDTVEQAQELARKNNVLLELLGEKEEEVEQL 84
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BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A7S2HQC5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQC5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.080e-9
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   10 RLEEMHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 204
            +L      RDALT EV  LG RN EL   A   P+L  +AL  + KN +LL+LLGEK+EELE +Q
Sbjct:  316 KLRVTQTARDALTSEVLDLGERNQELMKAAARCPVLEKRALATKKKNDILLELLGEKSEELEELQ 380
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BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A7S2SPH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPH7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.520e-9
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   10 RLEEMHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 204
            RL  +  VRDALT E+  LGR+N E + LA+ +  L+ +   L  KN +LL+LLGEKTEELE  Q
Sbjct:  606 RLRHVEEVRDALTHELQELGRQNAEFKVLAEQSAALKQEVKVLVKKNDLLLELLGEKTEELEEAQ 670
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BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A4D9CLU0_9STRA (TMF_TATA_bd domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLU0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.110e-7
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 LHLRLEEMHAVRDALTEEVTSLGRRNT--ELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQVK 210
            L  RL ++   RDALTEEVT LGR+N+    +A+  AA + + + L  + +  VLL+LLGEKTEE+EA++ +
Sbjct:  625 LQSRLHDLERTRDALTEEVTVLGRQNSLQAAKAMRSAAEVTKLRGLSKEKE--VLLELLGEKTEEVEALEAE 694
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K2Z4_9PHAE2.700e-2480.88TMF_TATA_bd domain-containing protein n=1 Tax=Ecto... [more]
D7G6G4_ECTSI2.700e-2480.88TMF_TATA_bd domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2BWU5_9STRA4.490e-1152.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZDC3_9STRA7.790e-1049.25TATA element modulatory factor 1 TATA binding prot... [more]
A0A7S2HQC5_9STRA1.080e-950.77Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SPH7_9STRA1.520e-950.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CLU0_9STRA3.110e-745.83TMF_TATA_bd domain-containing protein n=1 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122990contigH-elongata_contig122990:66..1336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue3e-19
Seed eggNOG ortholog2880.D7G6G4
Preferred nameTMF1
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188,ko:K20286
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0000139,GO:0001675,GO:0001817,GO:0001819,GO:0003006,GO:0003008,GO:0003674,GO:0003712,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0006952,GO:0006996,GO:0006997,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009889,GO:0009892,GO:0009894,GO:0009914,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010817,GO:0010927,GO:0010941,GO:0012505,GO:0014070,GO:0016020,GO:0016043,GO:0016050,GO:0016070,GO:0017016,GO:0017137,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030154,GO:0030162,GO:0030317,GO:0031090,GO:0031267,GO:0031323,GO:0031326,GO:0031329,GO:0031984,GO:0032268,GO:0032274,GO:0032275,GO:0032368,GO:0032370,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032879,GO:0032940,GO:0032989,GO:0033327,GO:0033363,GO:0034641,GO:0034645,GO:0034654,GO:0040011,GO:0042176,GO:0042221,GO:0042742,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0046483,GO:0046546,GO:0046661,GO:0046879,GO:0046883,GO:0046887,GO:0046903,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050886,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051252,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060548,GO:0060986,GO:0061136,GO:0061458,GO:0065007,GO:0065008,GO:0070887,GO:0070925,GO:0071310,GO:0071407,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097722,GO:0098542,GO:0098588,GO:0098791,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903050,GO:1903362,GO:1903506,GO:1903530,GO:1903532,GO:1905952,GO:1905954,GO:2000112,GO:2000843,GO:2000845,GO:2001141
EggNOG free text desc.positive regulation of testosterone secretion
EggNOG OGsKOG4673@1,KOG4673@2759
Ec32 ortholog descriptionTATA element modulatory factor 1 TATA binding
Ec32 orthologEc-05_006110.1
EC3.2.1.21
COG Functional cat.S
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122990.1750.1prot_H-elongata_contig122990.1750.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122990 87..1336 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929724.0971076-UTR-H-elongata_contig122990:65..861622929724.0971076-UTR-H-elongata_contig122990:65..86Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122990 66..86 +
1691679133.4866936-UTR-H-elongata_contig122990:65..861691679133.4866936-UTR-H-elongata_contig122990:65..86Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122990 66..86 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929724.1068673-CDS-H-elongata_contig122990:86..1911622929724.1068673-CDS-H-elongata_contig122990:86..191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122990 87..191 +
1691679133.4989476-CDS-H-elongata_contig122990:86..1911691679133.4989476-CDS-H-elongata_contig122990:86..191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122990 87..191 +
1622929724.1157367-CDS-H-elongata_contig122990:1249..13361622929724.1157367-CDS-H-elongata_contig122990:1249..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122990 1250..1336 +
1691679133.5146368-CDS-H-elongata_contig122990:1249..13361691679133.5146368-CDS-H-elongata_contig122990:1249..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122990 1250..1336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122990.1750.1

>prot_H-elongata_contig122990.1750.1 ID=prot_H-elongata_contig122990.1750.1|Name=mRNA_H-elongata_contig122990.1750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLL
GEKTEELEAMQVK*
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mRNA from alignment at H-elongata_contig122990:66..1336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122990.1750.1 ID=mRNA_H-elongata_contig122990.1750.1|Name=mRNA_H-elongata_contig122990.1750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1271bp|location=Sequence derived from alignment at H-elongata_contig122990:66..1336+ (Himanthalia elongata Himel1 dioecious)
TTGCATCTCAGGCTGGAAGAGATGCATGCCGTCCGCGACGCCCTCACGGA
AGAGGTGACTTCACTGGGACGGAGAAACACCGAGCTAGAGGCTCTCGCCA
AGGCAGCGCCGATATTGAGGGATCAGGTAGGCACGCCGCAGCTGTGGTTG
ATCTAATAATAGTGTCTCATTTTCAGCCTAATCTATTAACAGTATAATAT
AGTATAGTATAGTATATAATAGTATAGTATAGTATAGTATAGTATAGTAT
AGTATAGAGCTAGACTAAAGCCTATAGAGATTTCTTTGACAAGGCATATC
GTATTAATAAATAGTAAGACTTATTATAGTGTTATTATAGTGTTATTAGT
AGGGGGCGTCGCATCGGTTTTCACGAATGTATGTACCGGGTTGGGAGTTA
TCGACTAAAGTCGATATGGTGATGTGACGAACACACGCACACGCAAGACG
CTGATGACCTACATAAGAACTGTAGAGGGTATGTCCCCTTTGTCACGTCT
GATCAGGGGCTTTTGTAACCAACATGATTGATGCTCCATTGGGAGTATCA
ATGCATGTAGCCTACCCCGTTCGTGTTCCCGCTCCTTCCTGTCCATCGGA
TCCGGTTGTCCGCCCGGTACGATGCGCTTGCACGGATGCTAGTCTTTGCG
AACGGGGTTGTCGGGTGCTCGCAAGCGCCACCCCCTGTCTGCAAAGATGG
TGACGCGTTCGGAATGGAAGTGCCTGCTGTAAAACAAAAGAGAACCGCCG
CCCAAGACGTGCTATTTCCATCCCTTGCGCCAGATGTTGGGACTCGTTGG
GTTGTGTCTCCAACCTGTGCTGTACCCGTCTGATGGCGAGCTCCTTGATG
AGGACTTGCATGTCCGAGCCAAGCATGAAAGGGCCGGCCGGATTGGGCGG
TTATGCGCAATTTAATATACACACACACAGTAGAAAATATTATTGATCCC
CCATTTGGAGGACCTGGTCAAAATCAATGCCATCAATGCTATTAATGCTA
TATTGTAGCACGACATGGTTGAATTGCGCGGTTATCTACAGTTTAATAAA
CACACACACACACATACACTTTACCTTCAATTTAATCAATATGTCTTCTT
GTGCCTCTTACGATTTTTCTCTATGTATTAAAGTATGCAGTAAATATTGC
GTTGGTGTTGCTTTTCCCCTCTTCCCCTCTCCAGGCCCTGGACTTGCAAC
ATAAGAACACCGTGCTATTGGATCTACTAGGAGAGAAGACCGAAGAGCTC
GAGGCAATGCAGGTAAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig122990:66..1336+

>mRNA_H-elongata_contig122990.1750.1 ID=mRNA_H-elongata_contig122990.1750.1|Name=mRNA_H-elongata_contig122990.1750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig122990:66..1336+ (Himanthalia elongata Himel1 dioecious)
ATGCATGCCGTCCGCGACGCCCTCACGGAAGAGGTGACTTCACTGGGACG
GAGAAACACCGAGCTAGAGGCTCTCGCCAAGGCAGCGCCGATATTGAGGG
ATCAGATGCATGCCGTCCGCGACGCCCTCACGGAAGAGGTGACTTCACTG
GGACGGAGAAACACCGAGCTAGAGGCTCTCGCCAAGGCAGCGCCGATATT
GAGGGATCAGGCCCTGGACTTGCAACATAAGAACACCGTGCTATTGGATC
TACTAGGAGAGAAGACCGAAGAGCTCGAGGCAATGCAGGTAAAGTAAGCC
CTGGACTTGCAACATAAGAACACCGTGCTATTGGATCTACTAGGAGAGAA
GACCGAAGAGCTCGAGGCAATGCAGGTAAAGTAA
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