mRNA_H-elongata_contig122978.1749.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122978.1749.1
Unique NamemRNA_H-elongata_contig122978.1749.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122978.1749.1 vs. uniprot
Match: D8LQY6_ECTSI (Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY6_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 3.390e-26
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 LRMYPYYFFMTSQAAVAAPPSTAASTDPFDSRVLDPRMELPPAHSLVLNKFNTVRNHALIITKEFQSQEEALTE 222
            L M+  +  + ++AA+A PP++AAS DPFD RVLDPRMELPP+HSLVLNKFNTVRNHALIIT EFQSQ+EALTE
Sbjct:  210 LPMHTTFEALEAKAAIATPPASAASDDPFDPRVLDPRMELPPSHSLVLNKFNTVRNHALIITTEFQSQQEALTE 283
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BLAST of mRNA_H-elongata_contig122978.1749.1 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.640e-23
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   28 MTSQAAVAAPPSTAASTDPFDSRVLDPRM---ELPPAHSLVLNKFNTVRNHALIITKEFQSQEEALTE 222
            + ++AA+A PP++AAS DPFD RVLDPRM   ELPP+HSLVLNKFNT+RNHALIIT EFQSQ+EALTE
Sbjct:  374 LEAKAAIATPPASAASDDPFDPRVLDPRMAVEELPPSHSLVLNKFNTMRNHALIITTEFQSQQEALTE 441
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BLAST of mRNA_H-elongata_contig122978.1749.1 vs. uniprot
Match: A0A8J4EWE9_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EWE9_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 7.840e-6
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   58 PSTAASTDPFDSRVLDPR-----MELPPAHSLVLNKFNTVRNHALIITKEFQSQEEAL 216
            P+ A+S  P+ +  L P       EL   HSLVLNKFN V++H L+IT+EF+SQ E L
Sbjct:  193 PTAASSAPPWRNPFLPPEPELFVRELDAEHSLVLNKFNVVQHHVLVITREFRSQAEPL 250
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BLAST of mRNA_H-elongata_contig122978.1749.1 vs. uniprot
Match: A0A150H394_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H394_GONPE)

HSP 1 Score: 50.8 bits (120), Expect = 1.440e-5
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:  118 LPPAHSLVLNKFNTVRNHALIITKEFQSQEEAL 216
            L PAHSLVLNKFN VR+H ++IT+EF+SQ E L
Sbjct:  115 LGPAHSLVLNKFNVVRHHTIVITREFRSQAEPL 147
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BLAST of mRNA_H-elongata_contig122978.1749.1 vs. uniprot
Match: A0A8J4DBT7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DBT7_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 3.750e-5
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   58 PSTAASTDPFDSRVLDPRMEL-----PPAHSLVLNKFNTVRNHALIITKEFQSQEEAL 216
            P+ A S  P+ +  L P  EL        HSLVLNKFN V++H L+IT+EF+SQ E L
Sbjct:  185 PTAALSPPPWRNPFLPPEPELFVRQLGAEHSLVLNKFNVVQHHVLVITREFRSQAEPL 242
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BLAST of mRNA_H-elongata_contig122978.1749.1 vs. uniprot
Match: A0A6T6N5E7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6N5E7_9RHOD)

HSP 1 Score: 49.3 bits (116), Expect = 4.800e-5
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:  115 ELPPAHSLVLNKFNTVRNHALIITKEFQSQEEALT 219
            + PP H+L+LNKFN V NH LI+TKEF+ Q   LT
Sbjct:   73 DAPPCHALLLNKFNVVDNHLLIVTKEFEDQSSLLT 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122978.1749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQY6_ECTSI3.390e-2672.97Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L694_9PHAE2.640e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J4EWE9_9CHLO7.840e-648.28Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A150H394_GONPE1.440e-569.70Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J4DBT7_9CHLO3.750e-548.28Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A6T6N5E7_9RHOD4.800e-560.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122978contigH-elongata_contig122978:656..1706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122978.1749.1prot_H-elongata_contig122978.1749.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122978 656..1700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929724.0177994-CDS-H-elongata_contig122978:655..7631622929724.0177994-CDS-H-elongata_contig122978:655..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122978 656..763 -
1691679133.4632723-CDS-H-elongata_contig122978:655..7631691679133.4632723-CDS-H-elongata_contig122978:655..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122978 656..763 -
1622929724.0359874-CDS-H-elongata_contig122978:1592..17001622929724.0359874-CDS-H-elongata_contig122978:1592..1700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122978 1593..1700 -
1691679133.4704514-CDS-H-elongata_contig122978:1592..17001691679133.4704514-CDS-H-elongata_contig122978:1592..1700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122978 1593..1700 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929724.0552092-UTR-H-elongata_contig122978:1700..17061622929724.0552092-UTR-H-elongata_contig122978:1700..1706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122978 1701..1706 -
1691679133.4783347-UTR-H-elongata_contig122978:1700..17061691679133.4783347-UTR-H-elongata_contig122978:1700..1706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122978 1701..1706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122978.1749.1

>prot_H-elongata_contig122978.1749.1 ID=prot_H-elongata_contig122978.1749.1|Name=mRNA_H-elongata_contig122978.1749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MYPYYFFMTSQAAVAAPPSTAASTDPFDSRVLDPRMELPPAHSLVLNKFN
TVRNHALIITKEFQSQEEALTE
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mRNA from alignment at H-elongata_contig122978:656..1706-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122978.1749.1 ID=mRNA_H-elongata_contig122978.1749.1|Name=mRNA_H-elongata_contig122978.1749.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1051bp|location=Sequence derived from alignment at H-elongata_contig122978:656..1706- (Himanthalia elongata Himel1 dioecious)
CTCCGTATGTATCCTTATTATTTTTTTATGACCTCTCAGGCGGCCGTTGC
GGCACCTCCATCCACTGCCGCCAGTACGGACCCTTTCGACTCCCGAGTGC
TGGACCCTAGAATGGTGAGAAAAATAGCTAATTTTTCCAAGTTTGTATTC
GGTACGGTACGTACCGAGGCACACCGCCGGTATTATCGGTACCGTACCGG
ACACTTCGGTAAATTCGGTACAACGTCAATACCGGTACTGTACCGGACAC
TTCGGTAAGTTCGGTACAGCATCCATACCGGTACTGTACCAGACACTTCG
GTATGTTCGGTATGACGTCAATACCGGTACTGTACCGGACACTTCGGTAC
TACATCCATACCGGTAAATTCGGTACAATAAGTAAATACAGATATTTTAT
CTTTAGAGCATTTATATTAAAAAAGCATATGAAATCATTCCAACCTTCCG
AACATCCACGCCTTCGGTGTAGTCCAGGGGACCAAATATCGTCAGGTTCG
AATGTTCGAATGTGGACACATTTAAACACAAAATCGTTATACGTGATTAT
TCATCATATGGGGATGTCATGTGGTGGTTAGGAAGGGTTTGTCATAGCAT
GCAGAGAGTGATCATGTATTTCGATTGATTTCAGGTTTTAGGTGTGTCAT
TATTTATATAGGATATAGTATGGGGAGGTAACGCCAAAGCTTAGAGGGTT
ATTTCGGAGTATTATTGTTATTATTATTATTATTTTATTTTGTTTTATTT
TATTTTATTTTATTTTATGATTATTATGATTATTATGATTATTTTATTTT
AATGGTTTTCGCCCTTCTCTTGAGAGCTAAATTTTCAATATAGGCAGTAA
TTGATCCATTTCTTATCCATGTTTTGAAAACGGCTTCCCCCGCTCATATG
CTGCTGTGTGCTAAAACTATATAAACGCTCCCAGATCGTTGAGGAACTCC
CGCCGGCGCACTCGTTGGTGCTCAACAAGTTCAATACCGTCAGAAACCAC
GCGCTCATCATCACGAAGGAGTTCCAGTCGCAGGAGGAGGCCTTGACAGA
A
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Coding sequence (CDS) from alignment at H-elongata_contig122978:656..1706-

>mRNA_H-elongata_contig122978.1749.1 ID=mRNA_H-elongata_contig122978.1749.1|Name=mRNA_H-elongata_contig122978.1749.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig122978:656..1706- (Himanthalia elongata Himel1 dioecious)
ATGTATCCTTATTATTTTTTTATGACCTCTCAGGCGGCCGTTGCGGCACC
TCCATCCACTGCCGCCAGTACGGACCCTTTCGACTCCCGAGTGCTGGACC
CTAGAATGATGTATCCTTATTATTTTTTTATGACCTCTCAGGCGGCCGTT
GCGGCACCTCCATCCACTGCCGCCAGTACGGACCCTTTCGACTCCCGAGT
GCTGGACCCTAGAATGGAACTCCCGCCGGCGCACTCGTTGGTGCTCAACA
AGTTCAATACCGTCAGAAACCACGCGCTCATCATCACGAAGGAGTTCCAG
TCGCAGGAGGAGGCCTTGACAGAAGAACTCCCGCCGGCGCACTCGTTGGT
GCTCAACAAGTTCAATACCGTCAGAAACCACGCGCTCATCATCACGAAGG
AGTTCCAGTCGCAGGAGGAGGCCTTGACAGAA
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