mRNA_H-elongata_contig122957.1746.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE) HSP 1 Score: 145 bits (366), Expect = 8.020e-36 Identity = 78/173 (45.09%), Postives = 113/173 (65.32%), Query Frame = 2
Query: 161 RWTNQRNMMERLLQLKEPVVEYFR*NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDKP-DMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVEEM 676
RW +Q MM RLL+LK+ +VEYFR N N+ R+L+S +W VTN+VCS+ D +AEV +KIQGA DT+ISQ F M+E+ EI + + +IRVPD+P + D V E++ +L + EV ME+K+LG A P E I LDP+RK S++ ++G L+ I+DV+ +
Sbjct: 121 RWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSV 293
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE) HSP 1 Score: 145 bits (366), Expect = 6.280e-35 Identity = 78/173 (45.09%), Postives = 113/173 (65.32%), Query Frame = 2
Query: 161 RWTNQRNMMERLLQLKEPVVEYFR*NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDKP-DMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVEEM 676
RW +Q MM RLL+LK+ +VEYFR N N+ R+L+S +W VTN+VCS+ D +AEV +KIQGA DT+ISQ F M+E+ EI + + +IRVPD+P + D V E++ +L + EV ME+K+LG A P E I LDP+RK S++ ++G L+ I+DV+ +
Sbjct: 449 RWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSV 621
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE) HSP 1 Score: 127 bits (319), Expect = 7.250e-29 Identity = 75/198 (37.88%), Postives = 118/198 (59.60%), Query Frame = 2
Query: 161 RWTNQRNMMERLLQLKEPVVEYFR*-------NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRV------PDKPDMDPVPYEQVNKSE---------------LFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVE 670
RWT+Q+ MM RLL LK+P+ EYFR N KR+LT+H+W VTN+VCS+ + ++EV I++QGA DT++SQATF++ E+I+++ ++ IRV P P +P E ++E L + + V+V EVM+EK +G+AL E +SV LDP+RK + + +G + L+T +D++
Sbjct: 266 RWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLK 463
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.150e-27 Identity = 60/149 (40.27%), Postives = 98/149 (65.77%), Query Frame = 2
Query: 161 RWTNQRNMMERLLQLKEPVVEYFR*NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDKPDMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMM 607
RWT+Q MM+RLL LK+P+ EYFR ++ R+LT +W +TN+VCS+ ++EV I++QGA+DT+ISQA F++ E++E++ + IR + + E++ EL + +EV +VMEEK +G+A+ E +S +DP+RK +
Sbjct: 457 RWTSQFKMMDRLLALKKPITEYFREQPHNSRKLTQPEWTITNEVCSLLSDVSEVTIRMQGAKDTHISQAMFIIHEVMEMLREDSHPIRAQNATEP-----EEMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSL 600
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE) HSP 1 Score: 122 bits (306), Expect = 4.000e-27 Identity = 70/177 (39.55%), Postives = 109/177 (61.58%), Query Frame = 2
Query: 161 RWTNQRNMMERLLQLKEPVVEYFR*-------NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDKPDMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVE 670
RWT+Q+ MM RLL LK+P+ EYFR N KR+LT+H+W VTN+VCS+ + ++EV I++QGA +T++SQATF++ E E N L D + E+ + L + + V+V RE+M+EK +G+AL E +SV LDP+RK + + +G + L+T +D++
Sbjct: 266 RWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATETHLSQATFIINEG-EGQNESSL----------DGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLK 431
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE) HSP 1 Score: 118 bits (295), Expect = 6.870e-26 Identity = 74/204 (36.27%), Postives = 114/204 (55.88%), Query Frame = 2
Query: 167 TNQRNMMERLLQLKEPVVEYFR*------NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRV------PDKPDMDPVPYEQ--------------VNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVEEMDITSSGTS 700
T+Q MM RLL LK+P+ EYFR N KR+L+SH+W VTN+VCS+ ++E+ I+IQGA+DT+ISQA FL+ E++E++ E IR P P +D +P E+ ++ +L + + +V EVMEEK +G+AL E +S LDP+RK + +G L+ +D+++ T + S
Sbjct: 123 TSQFKMMGRLLTLKKPISEYFRRLPQIPSNKQLKRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFTAES 326
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.820e-16 Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 2
Query: 164 WTNQRNMMERLLQLKEPVVEYFR*NSND-------KRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRV 427
WT+Q MM RLL L + + EYFR + KR+LT+H+W VTN+VCS+ D ++E I++QGA DT+ISQATF++ E++E++ + IRV
Sbjct: 260 WTSQFRMMVRLLILNKAINEYFRRLAQQNPQHKQLKRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLKEDSHPIRV 354
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.600e-14 Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = 2
Query: 8 QVDLTTVASAEYITFSASYIPPGEVTIRRIGLATRAFPARTPRTTWNTG*RRWTNQRNMMERLLQLKEPVVEYFR*NSNDKRRLTSHDWNVTNQVCSIPDP-IAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDK----PDMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMS 610
Q+DLTTVA EYITF+ SY+ G + R+ LA RAFP T R W +E L L V+ C++ D I I++QGAEDT+ISQA ++ ++E++ + IR + P D +P +++ ++L + + +EV EVM EK + +A+ E +S +DP+RK ++
Sbjct: 405 QLDLTTVAGEEYITFTVSYVKKGSTDVTRVALACRAFPG----THTADDIRPW------IEELRCLFLHCVQ-----------------------CAVQDDDIFGATIRMQGAEDTHISQAIVIIHVVMEMLREDSHPIRAKNATVMPPPPDGIPTDEMEVTDLSLEAQEVLEVLLEVMGEKQVEKAVQQVERLSALMDPRRKSLN 577 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122957.1746.1 >prot_H-elongata_contig122957.1746.1 ID=prot_H-elongata_contig122957.1746.1|Name=mRNA_H-elongata_contig122957.1746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp MKELIEIMNSECLQIRVPDKPDMDPVPYEQVNKSELFPQVETAVEVYREVback to top mRNA from alignment at H-elongata_contig122957:152..1840- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122957.1746.1 ID=mRNA_H-elongata_contig122957.1746.1|Name=mRNA_H-elongata_contig122957.1746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1689bp|location=Sequence derived from alignment at H-elongata_contig122957:152..1840- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122957:152..1840- >mRNA_H-elongata_contig122957.1746.1 ID=mRNA_H-elongata_contig122957.1746.1|Name=mRNA_H-elongata_contig122957.1746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig122957:152..1840- (Himanthalia elongata Himel1 dioecious)back to top |