mRNA_H-elongata_contig122957.1746.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122957.1746.1
Unique NamemRNA_H-elongata_contig122957.1746.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 8.020e-36
Identity = 78/173 (45.09%), Postives = 113/173 (65.32%), Query Frame = 2
Query:  161 RWTNQRNMMERLLQLKEPVVEYFR*NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDKP-DMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVEEM 676
            RW +Q  MM RLL+LK+ +VEYFR N N+ R+L+S +W VTN+VCS+ D +AEV +KIQGA DT+ISQ  F M+E+ EI + +  +IRVPD+P + D V  E++   +L  +     EV    ME+K+LG A  P E I   LDP+RK  S++  ++G   L+   I+DV+ +
Sbjct:  121 RWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSV 293          
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 6.280e-35
Identity = 78/173 (45.09%), Postives = 113/173 (65.32%), Query Frame = 2
Query:  161 RWTNQRNMMERLLQLKEPVVEYFR*NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDKP-DMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVEEM 676
            RW +Q  MM RLL+LK+ +VEYFR N N+ R+L+S +W VTN+VCS+ D +AEV +KIQGA DT+ISQ  F M+E+ EI + +  +IRVPD+P + D V  E++   +L  +     EV    ME+K+LG A  P E I   LDP+RK  S++  ++G   L+   I+DV+ +
Sbjct:  449 RWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSV 621          
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 7.250e-29
Identity = 75/198 (37.88%), Postives = 118/198 (59.60%), Query Frame = 2
Query:  161 RWTNQRNMMERLLQLKEPVVEYFR*-------NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRV------PDKPDMDPVPYEQVNKSE---------------LFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVE 670
            RWT+Q+ MM RLL LK+P+ EYFR        N   KR+LT+H+W VTN+VCS+ + ++EV I++QGA DT++SQATF++ E+I+++ ++   IRV      P  P    +P E   ++E               L  + +  V+V  EVM+EK +G+AL   E +SV LDP+RK + +    +G + L+T   +D++
Sbjct:  266 RWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLK 463          
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.150e-27
Identity = 60/149 (40.27%), Postives = 98/149 (65.77%), Query Frame = 2
Query:  161 RWTNQRNMMERLLQLKEPVVEYFR*NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDKPDMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMM 607
            RWT+Q  MM+RLL LK+P+ EYFR   ++ R+LT  +W +TN+VCS+   ++EV I++QGA+DT+ISQA F++ E++E++  +   IR  +  +      E++   EL    +  +EV  +VMEEK +G+A+   E +S  +DP+RK +
Sbjct:  457 RWTSQFKMMDRLLALKKPITEYFREQPHNSRKLTQPEWTITNEVCSLLSDVSEVTIRMQGAKDTHISQAMFIIHEVMEMLREDSHPIRAQNATEP-----EEMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSL 600          
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.000e-27
Identity = 70/177 (39.55%), Postives = 109/177 (61.58%), Query Frame = 2
Query:  161 RWTNQRNMMERLLQLKEPVVEYFR*-------NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDKPDMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVE 670
            RWT+Q+ MM RLL LK+P+ EYFR        N   KR+LT+H+W VTN+VCS+ + ++EV I++QGA +T++SQATF++ E  E  N   L          D +  E+   + L  + +  V+V RE+M+EK +G+AL   E +SV LDP+RK + +    +G + L+T   +D++
Sbjct:  266 RWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATETHLSQATFIINEG-EGQNESSL----------DGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLK 431          
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.870e-26
Identity = 74/204 (36.27%), Postives = 114/204 (55.88%), Query Frame = 2
Query:  167 TNQRNMMERLLQLKEPVVEYFR*------NSNDKRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRV------PDKPDMDPVPYEQ--------------VNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVEEMDITSSGTS 700
            T+Q  MM RLL LK+P+ EYFR       N   KR+L+SH+W VTN+VCS+   ++E+ I+IQGA+DT+ISQA FL+ E++E++  E   IR       P  P +D +P E+              ++  +L  + +   +V  EVMEEK +G+AL   E +S  LDP+RK +      +G   L+    +D+++   T +  S
Sbjct:  123 TSQFKMMGRLLTLKKPISEYFRRLPQIPSNKQLKRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFTAES 326          
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.820e-16
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  164 WTNQRNMMERLLQLKEPVVEYFR*NSND-------KRRLTSHDWNVTNQVCSIPDPIAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRV 427
            WT+Q  MM RLL L + + EYFR  +         KR+LT+H+W VTN+VCS+ D ++E  I++QGA DT+ISQATF++ E++E++  +   IRV
Sbjct:  260 WTSQFRMMVRLLILNKAINEYFRRLAQQNPQHKQLKRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLKEDSHPIRV 354          
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.600e-14
Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = 2
Query:    8 QVDLTTVASAEYITFSASYIPPGEVTIRRIGLATRAFPARTPRTTWNTG*RRWTNQRNMMERLLQLKEPVVEYFR*NSNDKRRLTSHDWNVTNQVCSIPDP-IAEVNIKIQGAEDTYISQATFLMKELIEIMNSECLQIRVPDK----PDMDPVPYEQVNKSELFPQVETAVEVYREVMEEKDLGRALNPTEHISVFLDPKRKMMS 610
            Q+DLTTVA  EYITF+ SY+  G   + R+ LA RAFP     T      R W      +E L  L    V+                       C++ D  I    I++QGAEDT+ISQA  ++  ++E++  +   IR  +     P  D +P +++  ++L  + +  +EV  EVM EK + +A+   E +S  +DP+RK ++
Sbjct:  405 QLDLTTVAGEEYITFTVSYVKKGSTDVTRVALACRAFPG----THTADDIRPW------IEELRCLFLHCVQ-----------------------CAVQDDDIFGATIRMQGAEDTHISQAIVIIHVVMEMLREDSHPIRAKNATVMPPPPDGIPTDEMEVTDLSLEAQEVLEVLLEVMGEKQVEKAVQQVERLSALMDPRRKSLN 577          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122957.1746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE8.020e-3645.09Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE6.280e-3545.09Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZU3_9PHAE7.250e-2937.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.150e-2740.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE4.000e-2739.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE6.870e-2636.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE1.820e-1646.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE1.600e-1431.07Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122957contigH-elongata_contig122957:152..1840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1024
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122957.1746.1prot_H-elongata_contig122957.1746.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122957 395..799 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.809552-UTR-H-elongata_contig122957:151..3941622929723.809552-UTR-H-elongata_contig122957:151..394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122957 152..394 -
1691679133.396547-UTR-H-elongata_contig122957:151..3941691679133.396547-UTR-H-elongata_contig122957:151..394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122957 152..394 -
1622929723.837403-UTR-H-elongata_contig122957:799..10131622929723.837403-UTR-H-elongata_contig122957:799..1013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122957 800..1013 -
1691679133.4132447-UTR-H-elongata_contig122957:799..10131691679133.4132447-UTR-H-elongata_contig122957:799..1013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122957 800..1013 -
1622929723.8562949-UTR-H-elongata_contig122957:1678..18401622929723.8562949-UTR-H-elongata_contig122957:1678..1840Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122957 1679..1840 -
1691679133.4206214-UTR-H-elongata_contig122957:1678..18401691679133.4206214-UTR-H-elongata_contig122957:1678..1840Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122957 1679..1840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.8231072-CDS-H-elongata_contig122957:394..7991622929723.8231072-CDS-H-elongata_contig122957:394..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122957 395..799 -
1691679133.4060345-CDS-H-elongata_contig122957:394..7991691679133.4060345-CDS-H-elongata_contig122957:394..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122957 395..799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122957.1746.1

>prot_H-elongata_contig122957.1746.1 ID=prot_H-elongata_contig122957.1746.1|Name=mRNA_H-elongata_contig122957.1746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MKELIEIMNSECLQIRVPDKPDMDPVPYEQVNKSELFPQVETAVEVYREV
MEEKDLGRALNPTEHISVFLDPKRKMMSEDDCIDGCNALQTMEISDVEEM
DITSSGTSRRILAGHQPLHQLQFLRQLPVWRLQP*
back to top

mRNA from alignment at H-elongata_contig122957:152..1840-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122957.1746.1 ID=mRNA_H-elongata_contig122957.1746.1|Name=mRNA_H-elongata_contig122957.1746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1689bp|location=Sequence derived from alignment at H-elongata_contig122957:152..1840- (Himanthalia elongata Himel1 dioecious)
TTCGGGACAGGTAGACTTGACAACAGTGGCCAGCGCTGAGTACATAACAT TTTCGGCGTCATACATTCCTCCCGGCGAGGTGACCATAAGGCGCATTGGA CTCGCTACAAGGGCATTCCCGGCTCGCACACCGCGAACGACGTGGAATAC TGGTTGAAGAAGGTGGGGAACGCGTCCGATCGAGTGTGAAATAAAATATA AAATTTAAATCTAGATGGTGATGTGGGTATCGTTTGTGGATACTTTCACG TGCTTAAAAGAAAAAGAAAAAAGTGGGATATTCCGTGTTCACCTCATTGA AGCCACGCTTACTTGCATTTGTGTCCCTTGCTTGGCTTAGCAGATCACTA AAGAGTGGTTCTCGAAACTCGTGGGAGACAGGGTTGAGCCCTTGGACGTC TTCCTTGTTTTTACTGTAGACCAAGGCTATAACGTGGTGAATGCGATCGA AGCCCTGAACGTCCCGGTAGTATTGTGCAACGCACACCGCTTGAATATGG TGGTTTGCTGGATGCTCGGTATTGCCGGGACTGACAAGACATGCAAGAAC CACGTCTTGGAAAAAAACATGAAGAAGCTCACTGCGTGTGTGGGAAAGTT CAGTCATTCCACGGTGAACAACAGCGAGTTCAAAACGATACAAGAGTTTT CCACAGTTTTCAGCACGTTCTACGAGCTCATCAGACGTAATGACACCAGG TAACAAGTCTTTAATACCCAGGTGCCGTCCTCCCATGAATATTCACGCGA AACACGAAATATACACAGAAGATATGTTCGAGTTGGTCAGCTTAGATTGT GTTCCACCCTTTCTTCACTCAACGCAGGTGGACCAACCAGAGGAATATGA TGGAGCGTCTTCTTCAACTTAAGGAGCCCGTCGTTGAGTACTTCAGGTGA AACTCGAACGACAAAAGACGGCTTACCAGTCATGACTGGAATGTCACGAA CCAAGTCTGCAGCATCCCCGATCCTATCGCCGAAGTGAACATAAAAATTC AAGGAGCTGAGGACACGTACATCAGCCAGGCGACCTTCCTGATGAAGGAA CTGATAGAGATCATGAACTCTGAGTGTCTTCAGATCCGGGTTCCAGACAA GCCAGACATGGATCCCGTACCATACGAACAAGTAAACAAATCTGAACTTT TTCCGCAGGTTGAAACGGCGGTCGAGGTGTATAGAGAAGTAATGGAGGAA AAGGACCTGGGTAGGGCTTTGAACCCAACTGAGCACATCAGCGTCTTTCT CGATCCGAAAAGGAAAATGATGTCCGAGGACGATTGCATTGACGGTTGCA ATGCGCTTCAGACGATGGAAATTTCGGACGTCGAAGAGATGGACATCACT TCGTCGGGAACGTCGCGCAGAATTTTAGCAGGACACCAGCCCCTGCATCA GCTCCAGTTCCTGCGCCAGCTCCCGGTTTGGCGACTCCAGCCATAACTTT GCCGCGGGTGTCTTCAGTAATGGAGAAAAGACGCCTGGCCCGATTGGCTG CAGCTGGACATGGAAGTAGTTCACATGGGGCACAGGGGGGGGGGGTACAT CCTACAACACACCACGTCGCCCTTCGACAGGAACTAACTAACTATTGAGG GCAAAACGTCGAAGCAGACGTGTGCGGCTTTTCGCTGCCAGGTTTTTGGC TCCGCAAGAGCGAGCCGACGCTTGCTCAGGGCACGGGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig122957:152..1840-

>mRNA_H-elongata_contig122957.1746.1 ID=mRNA_H-elongata_contig122957.1746.1|Name=mRNA_H-elongata_contig122957.1746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig122957:152..1840- (Himanthalia elongata Himel1 dioecious)
ATGAAGGAACTGATAGAGATCATGAACTCTGAGTGTCTTCAGATCCGGGT
TCCAGACAAGCCAGACATGGATCCCGTACCATACGAACAAGTAAACAAAT
CTGAACTTTTTCCGCAGGTTGAAACGGCGGTCGAGGTGTATAGAGAAGTA
ATGGAGGAAAAGGACCTGGGTAGGGCTTTGAACCCAACTGAGCACATCAG
CGTCTTTCTCGATCCGAAAAGGAAAATGATGTCCGAGGACGATTGCATTG
ACGGTTGCAATGCGCTTCAGACGATGGAAATTTCGGACGTCGAAGAGATG
GACATCACTTCGTCGGGAACGTCGCGCAGAATTTTAGCAGGACACCAGCC
CCTGCATCAGCTCCAGTTCCTGCGCCAGCTCCCGGTTTGGCGACTCCAGC
CATAAATGAAGGAACTGATAGAGATCATGAACTCTGAGTGTCTTCAGATC
CGGGTTCCAGACAAGCCAGACATGGATCCCGTACCATACGAACAAGTAAA
CAAATCTGAACTTTTTCCGCAGGTTGAAACGGCGGTCGAGGTGTATAGAG
AAGTAATGGAGGAAAAGGACCTGGGTAGGGCTTTGAACCCAACTGAGCAC
ATCAGCGTCTTTCTCGATCCGAAAAGGAAAATGATGTCCGAGGACGATTG
CATTGACGGTTGCAATGCGCTTCAGACGATGGAAATTTCGGACGTCGAAG
AGATGGACATCACTTCGTCGGGAACGTCGCGCAGAATTTTAGCAGGACAC
CAGCCCCTGCATCAGCTCCAGTTCCTGCGCCAGCTCCCGGTTTGGCGACT
CCAGCCATAA
back to top