mRNA_H-elongata_contig122920.1745.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122920.1745.1
Unique NamemRNA_H-elongata_contig122920.1745.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122920.1745.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.680e-6
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 RSAYKDAAELLKRALRVRLESLGSKHLDTADTLRRLGSLQHQLGCFDDA 147
            R A+++A  L + AL VR E LG KHLDTADTLR+LG L H+ G  ++A
Sbjct:  867 RLAHEEATLLCQWALHVREECLGPKHLDTADTLRKLGGLLHRQGLLEEA 915
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122920.1745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LDX5_9PHAE2.680e-655.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122920contigH-elongata_contig122920:815..979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-07_002130.1
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.7522302-CDS-H-elongata_contig122920:814..9791622929723.7522302-CDS-H-elongata_contig122920:814..979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122920 815..979 -
1691679133.3834944-CDS-H-elongata_contig122920:814..9791691679133.3834944-CDS-H-elongata_contig122920:814..979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122920 815..979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122920.1745.1prot_H-elongata_contig122920.1745.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122920 815..979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122920.1745.1

>prot_H-elongata_contig122920.1745.1 ID=prot_H-elongata_contig122920.1745.1|Name=mRNA_H-elongata_contig122920.1745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
RSAYKDAAELLKRALRVRLESLGSKHLDTADTLRRLGSLQHQLGCFDDAE
GCFM*
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mRNA from alignment at H-elongata_contig122920:815..979-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122920.1745.1 ID=mRNA_H-elongata_contig122920.1745.1|Name=mRNA_H-elongata_contig122920.1745.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig122920:815..979- (Himanthalia elongata Himel1 dioecious)
CGTAGTGCCTACAAAGACGCTGCAGAGTTGCTGAAGCGAGCCTTGAGGGT
AAGACTGGAATCCTTGGGGTCGAAACACCTGGACACTGCCGACACTCTAC
GGAGGCTGGGGAGTCTGCAGCACCAGCTGGGATGCTTTGACGACGCAGAA
GGGTGCTTCATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig122920:815..979-

>mRNA_H-elongata_contig122920.1745.1 ID=mRNA_H-elongata_contig122920.1745.1|Name=mRNA_H-elongata_contig122920.1745.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig122920:815..979- (Himanthalia elongata Himel1 dioecious)
CGTAGTGCCTACAAAGACGCTGCAGAGTTGCTGAAGCGAGCCTTGAGGGT
AAGACTGGAATCCTTGGGGTCGAAACACCTGGACACTGCCGACACTCTAC
GGAGGCTGGGGAGTCTGCAGCACCAGCTGGGATGCTTTGACGACGCAGAA
GGGTGCTTCATGTAACGTAGTGCCTACAAAGACGCTGCAGAGTTGCTGAA
GCGAGCCTTGAGGGTAAGACTGGAATCCTTGGGGTCGAAACACCTGGACA
CTGCCGACACTCTACGGAGGCTGGGGAGTCTGCAGCACCAGCTGGGATGC
TTTGACGACGCAGAAGGGTGCTTCATGTAA
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