mRNA_H-elongata_contig12277.1735.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12277.1735.1
Unique NamemRNA_H-elongata_contig12277.1735.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12277.1735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12277contigH-elongata_contig12277:1728..2376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue5.5e-11
Seed eggNOG ortholog2880.D8LTA4
EggNOG OGs28N4Y@1,2QUQ3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontransmembrane protein, putative
Ec32 orthologEc-12_005820.1
Exons2
Model size364
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12277.1735.1prot_H-elongata_contig12277.1735.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12277 1773..2330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.0777142-UTR-H-elongata_contig12277:1727..17721622929723.0777142-UTR-H-elongata_contig12277:1727..1772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12277 1728..1772 -
1691679133.1141062-UTR-H-elongata_contig12277:1727..17721691679133.1141062-UTR-H-elongata_contig12277:1727..1772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12277 1728..1772 -
1622929723.1204395-UTR-H-elongata_contig12277:2330..23761622929723.1204395-UTR-H-elongata_contig12277:2330..2376Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12277 2331..2376 -
1691679133.1522577-UTR-H-elongata_contig12277:2330..23761691679133.1522577-UTR-H-elongata_contig12277:2330..2376Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12277 2331..2376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.0946047-CDS-H-elongata_contig12277:1772..19251622929723.0946047-CDS-H-elongata_contig12277:1772..1925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12277 1773..1925 -
1691679133.130758-CDS-H-elongata_contig12277:1772..19251691679133.130758-CDS-H-elongata_contig12277:1772..1925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12277 1773..1925 -
1622929723.1092699-CDS-H-elongata_contig12277:2210..23301622929723.1092699-CDS-H-elongata_contig12277:2210..2330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12277 2211..2330 -
1691679133.1419978-CDS-H-elongata_contig12277:2210..23301691679133.1419978-CDS-H-elongata_contig12277:2210..2330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12277 2211..2330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12277.1735.1

>prot_H-elongata_contig12277.1735.1 ID=prot_H-elongata_contig12277.1735.1|Name=mRNA_H-elongata_contig12277.1735.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MAKNDRLLTLIRATEQVLLSDEQPRRHDNMELVEAEACRKQWKRVIRGWE
ADFEERNGTAPDANDKQFVRGYYEYYGRLKQFTASNKLNY*
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mRNA from alignment at H-elongata_contig12277:1728..2376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12277.1735.1 ID=mRNA_H-elongata_contig12277.1735.1|Name=mRNA_H-elongata_contig12277.1735.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=649bp|location=Sequence derived from alignment at H-elongata_contig12277:1728..2376- (Himanthalia elongata Himel1 dioecious)
GCCCGGCTTCAGTTTCGATCTTGTTGGCTCCACGAAGTCCTTGGCAATGG
CGAAGAACGATCGCCTCTTGACACTCATCCGCGCGACGGAACAGGTGCTG
CTGTCCGATGAGCAGCCACGGAGACATGACAACATGGAGCTGGTCGAGGC
GGAGGCATGTCGCAAGGTCTGAGACCTCGACGACGAGACGATTGGACTTA
TTACGCGTTGTCCTCCCCCCACACGCCCTCCTTGGCCGTCTGAGTCGTCA
TAATCAAACGTAAAAATATAATGAAGACCTTGTCCTTCCTGCTCTATACA
AAACTTATTTCCGAGCGGAGCTCCCCTTTGCGTGCCCCTTGATATTTTTT
TATATTTTTTTCAATACAACACCGACCGTCCACTTTCCTTTCACAAAGCA
ATCAACCGTGGGGTATGTGGGGGTGGGGGTGTGACTCCGAACGAGCATCA
GCAATGGAAGAGGGTCATCCGAGGCTGGGAAGCGGACTTCGAGGAGCGGA
ACGGAACCGCACCCGATGCCAACGATAAGCAGTTCGTCAGGGGCTACTAC
GAGTACTACGGGCGCCTGAAGCAGTTCACCGCAAGCAACAAATTAAACTA
CTAGCTATGATAGTAGTGCAGAGTCAGAGAAAGGCGAAGTAAACTAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig12277:1728..2376-

>mRNA_H-elongata_contig12277.1735.1 ID=mRNA_H-elongata_contig12277.1735.1|Name=mRNA_H-elongata_contig12277.1735.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig12277:1728..2376- (Himanthalia elongata Himel1 dioecious)
ATGGCGAAGAACGATCGCCTCTTGACACTCATCCGCGCGACGGAACAGGT
GCTGCTGTCCGATGAGCAGCCACGGAGACATGACAACATGGAGCTGGTCG
AGGCGGAGGCATGTCGCAAGATGGCGAAGAACGATCGCCTCTTGACACTC
ATCCGCGCGACGGAACAGGTGCTGCTGTCCGATGAGCAGCCACGGAGACA
TGACAACATGGAGCTGGTCGAGGCGGAGGCATGTCGCAAGCAATGGAAGA
GGGTCATCCGAGGCTGGGAAGCGGACTTCGAGGAGCGGAACGGAACCGCA
CCCGATGCCAACGATAAGCAGTTCGTCAGGGGCTACTACGAGTACTACGG
GCGCCTGAAGCAGTTCACCGCAAGCAACAAATTAAACTACTAGCAATGGA
AGAGGGTCATCCGAGGCTGGGAAGCGGACTTCGAGGAGCGGAACGGAACC
GCACCCGATGCCAACGATAAGCAGTTCGTCAGGGGCTACTACGAGTACTA
CGGGCGCCTGAAGCAGTTCACCGCAAGCAACAAATTAAACTACTAG
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