mRNA_H-elongata_contig122734.1733.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE) HSP 1 Score: 361 bits (927), Expect = 1.560e-110 Identity = 194/328 (59.15%), Postives = 219/328 (66.77%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRH----SRSAHEGDYFPAGPL-----------------------------------------GGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPSM+IAYNLCY+TILGKFDP+TGGTSG LG LPYPE+ TS AL +A ++HQ+W K+ T ++ V S + H P GP G WDPRC+H+A N AGFCHPSLRQGILP+MLREILETRVM+KGAM+RAE AGQRVLARTLNARQ+ALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAAR VD+H+ W ASVVYGDTDSLFIEL GRSLEEAHRIG+E+A+ VS+SCPPDV+LKFEKV
Sbjct: 2321 SLYPSMMIAYNLCYTTILGKFDPKTGGTSGSLGALPYPESNTSAALERAAEAHQAWRKRDGRTRSPLAAGRGASQQPPLSCLSPVDEEETPTNAAGVAARSPASSATHPTMETPTGPAVEAEPRSSPHPEDDAKHGDTQGSTPSDDHGGEGFPPRSRDREGMPGWDPRCIHLAPNTAGFCHPSLRQGILPVMLREILETRVMIKGAMRRAEGAGQRVLARTLNARQFALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARTVDTHKTWQASVVYGDTDSLFIELKGRSLEEAHRIGKEMATTVSQSCPPDVVLKFEKV 2648
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI) HSP 1 Score: 357 bits (916), Expect = 4.710e-109 Identity = 213/347 (61.38%), Postives = 237/347 (68.30%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGS--------------------TQVSSQAVRH--SRSAHEGDYFPAGPLG------------------------------------------GNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPSM+IAYNLCY+TILGKFDP+TGGTSG LG LPYPE+ TS AL +A ++HQ+W K+ XXXXXXXXXXXXXXXX G T + A R S + H PAGP G WDPRC+H+A N AGFCHPSLRQGILPLMLREILETRVM+KGAM+RAE AGQRVLARTLNARQ+ALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAAR VD+H+ W ASVVYGDTDSLFIEL GRSLE+AHRIG+E+A+ VS+SCPPDV+LKFEKV
Sbjct: 2426 SLYPSMMIAYNLCYTTILGKFDPKTGGTSGNLGALPYPESNTSAALERAAEAHQAWGKRDGRSNDHXXXXXXXXXXXXXXXXSPLATGRGGSQQPPLSHLSPVDEEETPTSAAGMAERSPASSATHPAMETPAGPXXXXXXXGSSPQPEDDAKQGDTQGSTPSDDHGGEGFSPRSRGKEGMPGWDPRCIHLAPNTAGFCHPSLRQGILPLMLREILETRVMIKGAMRRAEGAGQRVLARTLNARQFALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARTVDNHKTWQASVVYGDTDSLFIELKGRSLEDAHRIGKEMATTVSKSCPPDVVLKFEKV 2772
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A835YMN6_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMN6_9STRA) HSP 1 Score: 228 bits (580), Expect = 1.860e-65 Identity = 140/285 (49.12%), Postives = 165/285 (57.89%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGKFDPRTGG--TSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPSM+IAYNLC+STI+G+ D G T+ + GV P G++ SS+ GP +V+ N A FC R G+LP MLRE+LETR+MVKGAMKRA G+RVL RTL+ARQ+ALKMISNVTYGYTAAG+SGRMPMAELADAIVE GR TL AA RMV+SH W A VVYGDTDSLF+ L GRS EEA R+G+EIA+AV+ S PP V+LK EKV
Sbjct: 280 SLYPSMVIAYNLCFSTIMGRLDLSDAGHTTTDRAGVDP--------------------------------------------------AGTSPPSSEGTSEG-----------GP------------YVSPNGAVFCSTDQRVGVLPRMLRELLETRIMVKGAMKRARDRGERVLERTLDARQFALKMISNVTYGYTAAGYSGRMPMAELADAIVECGRATLEAAIRMVESHPPWGARVVYGDTDSLFVLLEGRSTEEAFRVGKEIAAAVTRSNPPAVVLKLEKV 491
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A2K3DDR6_CHLRE (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DDR6_CHLRE) HSP 1 Score: 214 bits (545), Expect = 2.770e-59 Identity = 139/289 (48.10%), Postives = 171/289 (59.17%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGK-FDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEK-----KHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPS +IAYNLCYST +G+ R GGT +LGV Y +V A A +++ +H XXXXXXX G + +A+ D P G P + ++ N + P +R G+LP MLREIL+TRVM+KGAMK+ +VL R LNARQ+ LKMI+NV+YGYTAAGFSGRMP AELADAIV+SGRQTL A MV+SH W A VVYGDTDS+F+ L GRS +EA RIG EIA AV+ + P V LK EKV
Sbjct: 5484 SLYPSQVIAYNLCYSTCVGRPMHARAGGTPVRLGVTQYSYPVGAVLPAGANNNNSXXXXXXXXPQHGGSQLAGRGAAXXXXXXXHQQEDQGAAGQXXXXXXXXXNDDAANN-DAGEEAPAAGTAT--PEDLVISPNGVAYVSPQVRPGVLPRMLREILDTRVMIKGAMKKVPPE-DKVLLRVLNARQFGLKMIANVSYGYTAAGFSGRMPFAELADAIVQSGRQTLENAIAMVESHPEWRARVVYGDTDSMFVLLQGRSRKEAFRIGAEIARAVTAANPSPVTLKMEKV 5768
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A7S3VKE1_DUNTE (DNA polymerase (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKE1_DUNTE) HSP 1 Score: 209 bits (533), Expect = 7.770e-58 Identity = 136/299 (45.48%), Postives = 163/299 (54.52%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGK-FDPRTGGTSGKLGVLPYPEAKTSV------------ALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAH---EGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPS IIAYNLCYST +G+ R G + L AL A H Q +R +++ G P GPL DP+ + V N GF S R G+LP ML EIL+TRVMVKGAMKR A + LARTL+ARQ+ALK+I+NVTYGYTAAG+SGRMP AELADAIV+SGRQTL A MV++H W A VVYGDTDS+F+ LPGR+ EEA RIG EIA+ ++E+ P V LKFEKV
Sbjct: 551 SLYPSQIIAYNLCYSTCIGRPAHARAGAAAAALKAQXXXXXXXXXXXRATDCGAGVGALGPAAXXXXXXXAPHAYAEGNGGHAEEADAGLAGNGLP-----------QGLRFGCTSYLLPYGSLSPDGPL------DPQDLVVTPNGVGFVDASTRPGVLPRMLSEILDTRVMVKGAMKRLTPA-DKALARTLDARQFALKLIANVTYGYTAAGYSGRMPFAELADAIVQSGRQTLENAIAMVEAHPKWRAHVVYGDTDSMFVHLPGRTREEAFRIGAEIAACITEANPSPVTLKFEKV 831
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A699ZWA4_HAELA (DNA polymerase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZWA4_HAELA) HSP 1 Score: 200 bits (509), Expect = 4.160e-57 Identity = 130/283 (45.94%), Postives = 156/283 (55.12%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPS +IAYNLCYST LG+ G +A ++A A + + K G+ V + S + G GPL DP + +A N + S+R G+LP ML E+L TRVM K AMKR A RVL R LNARQ LK+ISNVTYGYT+AGFSGRMP AELAD+IV+SGRQTL A R+V+ H W A VVYGDTDSLF+ LPGRS EEA +G EIA+AV+ PP V LK EKV
Sbjct: 242 SLYPSQMIAYNLCYSTCLGRPSHVRAG-----------QAAAALASADSGTDPAAGAKA-------------------------GTAGAAGVGVRLGVTSYAVPPGVMTAGGPL------DPDSLVIAPNGVAYAPASVRPGVLPRMLSELLNTRVMTKAAMKRH--AVDRVLQRVLNARQMGLKLISNVTYGYTSAGFSGRMPFAELADSIVQSGRQTLENAIRLVEGHPHWKARVVYGDTDSLFVLLPGRSREEAFVVGAEIAAAVTACNPPPVTLKMEKV 480
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A813A9Q7_9DINO (DNA-directed DNA polymerase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A9Q7_9DINO) HSP 1 Score: 195 bits (496), Expect = 4.850e-57 Identity = 122/283 (43.11%), Postives = 156/283 (55.12%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPS++IAYN+CYST LG+ PR G + TS H S + K +G + S + R+A + +A N A F +R+G+LPLML +ILETRVMVK AMKR EA VL R L+ARQ+ALKMI+NVTYGYT+AGFSGRMP AE+ADAIV + R+TL+A+ R +++ + W A VVYGDTDS+F+ L GRS EA RIG EIA +S+ P + LK EKV
Sbjct: 26 SLYPSIVIAYNMCYSTCLGRLSPRQVGKW-------FERCSTS--------RHISCQGK-----------------------LNEKLGFLEYSPPSAGLERAAKD-------------------AFIAPNGAVFVSRHVRRGVLPLMLNDILETRVMVKNAMKRKEAVNDPVLTRILHARQFALKMIANVTYGYTSAGFSGRMPCAEIADAIVHTARRTLLASMRTIEARKEWGARVVYGDTDSMFVLLEGRSTSEAFRIGNEIADTISDMNPNPMKLKMEKV 251
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A835WRV5_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WRV5_9CHLO) HSP 1 Score: 207 bits (528), Expect = 5.220e-57 Identity = 153/301 (50.83%), Postives = 181/301 (60.13%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGK-FDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHS-------RSAHE----------GDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPS +IAYNLCYST +G+ R GGT +LGV Y ++V A A XX XXXXXXXXXXXXXXXX + A RH R A E GD A G P + ++ N + P +R G+LP MLREIL+TRVM+KGAMK+ +VL R LNARQ+ LKMI+NV+YGYTAAGFSGRMP AELAD+IV+SGRQTL A MV+SH W A VVYGDTDS+F+ L GRS +EA RIG EIA AV+ + P V LK EKV
Sbjct: 5391 SLYPSQVIAYNLCYSTCVGRPMHARAGGTPVRLGVTQYSYPVSAVLPAAAAXXXXXXXXXXXXNLPQXXXXXXXXXXXXXXXXGRAGQEPGAGADAADRHMGPGPQQPRPAGEDMANNDLGCCGDGLVAAAEAGTA--SPEDLVISPNGVAYVPPEVRPGVLPRMLREILDTRVMIKGAMKKVPPE-DKVLLRVLNARQFGLKMIANVSYGYTAAGFSGRMPFAELADSIVQSGRQTLENAIAMVESHPEWRARVVYGDTDSMFVLLQGRSRKEAFRIGAEIARAVTAANPSPVTLKMEKV 5688
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A699Z3X2_HAELA (DNA polymerase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z3X2_HAELA) HSP 1 Score: 201 bits (510), Expect = 6.100e-57 Identity = 130/283 (45.94%), Postives = 156/283 (55.12%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPS +IAYNLCYST LG+ G +A ++A A + + K G+ V + S + G GPL DP + +A N + S+R G+LP ML E+L TRVM K AMKR A RVL R LNARQ LK+ISNVTYGYT+AGFSGRMP AELAD+IV+SGRQTL A R+V+ H W A VVYGDTDSLF+ LPGRS E+A IG EIA+AV+ PP V LK EKV
Sbjct: 249 SLYPSQMIAYNLCYSTCLGRPSHVRAG-----------QAAAALASADSGTDPAAGAKA-------------------------GTAGAAGVGVRLGVTSYAVPPGVMTAGGPL------DPDSLVIAPNGVAYAPASVRPGVLPRMLSELLNTRVMTKAAMKRH--AADRVLQRVLNARQMGLKLISNVTYGYTSAGFSGRMPFAELADSIVQSGRQTLENAIRLVEGHPHWKARVVYGDTDSLFVLLPGRSREDAFVIGAEIAAAVTACNPPPVTLKMEKV 487
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A2P6TTN7_CHLSO (DNA polymerase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTN7_CHLSO) HSP 1 Score: 204 bits (519), Expect = 7.720e-56 Identity = 130/283 (45.94%), Postives = 156/283 (55.12%), Query Frame = 1
Query: 1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
SLYPSMIIAYNLC+ST +G+ T G G L LP +G T+ P G L G + P + VA N F R G+LP +L+EIL TR+MVKGAMKRA + + VL R LNARQ+ LK+I+NVTYGYTAAGFSGRMPMA+LADAIV+SGR+TL A RMV++H W A VVYGDTDS+F+ LPGRS EA RIG EIA V+ + PP V+LK EKV
Sbjct: 1424 SLYPSMIIAYNLCFSTCMGRPSHATAGARGDL--LPK-------------------------------------------------LGCTEFG---------------LPPGTLTGALA--PEKLVVAPNGVAFAPKEARPGVLPRLLQEILNTRIMVKGAMKRAPKSAK-VLLRCLNARQFGLKLIANVTYGYTAAGFSGRMPMAQLADAIVQSGRETLENAIRMVNNHPEWRAQVVYGDTDSMFVLLPGRSRAEAFRIGEEIAREVTAANPPPVMLKMEKV 1637 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122734.1733.1 >prot_H-elongata_contig122734.1733.1 ID=prot_H-elongata_contig122734.1733.1|Name=mRNA_H-elongata_contig122734.1733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp MIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSback to top mRNA from alignment at H-elongata_contig122734:181..1898- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122734.1733.1 ID=mRNA_H-elongata_contig122734.1733.1|Name=mRNA_H-elongata_contig122734.1733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1718bp|location=Sequence derived from alignment at H-elongata_contig122734:181..1898- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122734:181..1898- >mRNA_H-elongata_contig122734.1733.1 ID=mRNA_H-elongata_contig122734.1733.1|Name=mRNA_H-elongata_contig122734.1733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig122734:181..1898- (Himanthalia elongata Himel1 dioecious)back to top |