mRNA_H-elongata_contig12271.1732.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A6H5KFS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS4_9PHAE) HSP 1 Score: 434 bits (1117), Expect = 3.880e-149 Identity = 220/269 (81.78%), Postives = 235/269 (87.36%), Query Frame = 1
Query: 10 RGARSTGVTGGDDHKEQAGSAKGG--QYAHVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
RG + + T H AG G QY+HVFRMIEQHSLFD VQ DRVLQ+I LDREL GELLLRHPEKF+VSSV QL G+RDLQHWYLG+LFDRSPEMYG+QEYAP+HALQVSLLAEFAPPFERGRPP Y SAFLRFLR +GFAPLEAALRECGKRRPPLYDEMAYILGRMG+TRRALTILLEEVGSVPRAIEFVE+HDKDLWYRLIEHSLK+E FLSGLLDHAGVYDVDL RLVAEIPKGM+IPGLRDK+VKIISDYHFQ
Sbjct: 53 RGRQGSSATPSITHGVGAGDGAGSEAQYSHVFRMIEQHSLFDAVQ------DRVLQLIRLDRELTGELLLRHPEKFSVSSVVAQLNGRRDLQHWYLGLLFDRSPEMYGAQEYAPYHALQVSLLAEFAPPFERGRPPAYTSAFLRFLRPTGFAPLEAALRECGKRRPPLYDEMAYILGRMGDTRRALTILLEEVGSVPRAIEFVEAHDKDLWYRLIEHSLKSETFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQ 315
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: D7FS06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS06_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 7.790e-144 Identity = 215/249 (86.35%), Postives = 228/249 (91.57%), Query Frame = 1
Query: 64 GSAKGGQYAHVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
G+ QY HVFRMIEQHSLFD VQ DRVLQ+I LDREL GELLLRHPEKF+VSSV QL+G+RDLQHWYLG+LFDRSPEMYG+QEYAPFHALQVSLLAEFAPPFERGRPP Y SAFLRFLR +GFAPLEAALRECGKRRPPLYDEMAYILGRMG+TRRALTILLEEVGSVPRAIEFVE+HDKDLWYRLIEHSLK+E FLSGLLDHAGVYDVDL RLVAEIPKGM+IPGLRDK+VKIISDYHFQ
Sbjct: 651 GAGSEAQYGHVFRMIEQHSLFDAVQ------DRVLQLIRLDRELTGELLLRHPEKFSVSSVVSQLKGRRDLQHWYLGLLFDRSPEMYGAQEYAPFHALQVSLLAEFAPPFERGRPPAYTSAFLRFLRPTGFAPLEAALRECGKRRPPLYDEMAYILGRMGDTRRALTILLEEVGSVPRAIEFVEAHDKDLWYRLIEHSLKSETFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQ 893
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A836CBT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT2_9STRA) HSP 1 Score: 230 bits (587), Expect = 2.890e-65 Identity = 131/266 (49.25%), Postives = 159/266 (59.77%), Query Frame = 1
Query: 88 AHVFRMIEQHSLFDTVQAR--------------------DNHTD-----------------------RVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDL------------QHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDL 720
AHVF++IEQHSLF +Q R H + RVL++I L + AG LL+RH +K + V QL G+RDL QHWYL +LF ++PE+Y + E+A FHALQVSL A+FAPPF+ RPPPY+S FLRFLRGS FAPLEAAL EC KRRPPL+DEM AL++LLEEV RAIEFV +HDKDLWYRLI++SL+NE FL GLLDHAGVY + L
Sbjct: 1010 AHVFKLIEQHSLFRAIQGRVRELVQLSQAGAIQIPSSSPRRHANAKILTSSAYSSILRIVLRAAVHFRVLELIQLSQADAGALLVRHVDKLPAAQVVPQLRGRRDLXXXXXXXXXXXXQHWYLHLLFTQAPELYNTPEHAQFHALQVSLYAQFAPPFQPRRPPPYDSDFLRFLRGSAFAPLEAALTECEKRRPPLWDEMV-----------ALSVLLEEVDCARRAIEFVGAHDKDLWYRLIDYSLRNERFLGGLLDHAGVYTLVL 1264
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: F0XVF2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF2_AURAN) HSP 1 Score: 172 bits (436), Expect = 4.690e-45 Identity = 94/241 (39.00%), Postives = 135/241 (56.02%), Query Frame = 1
Query: 94 VFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRD---LQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPP---YNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISD 798
VF ++E L++ V+ DRV + E A +LL++H ++F + V QL + D + WYL F R P++Y S ++ H L A P + P Y+S LRFLR S F PL A C + PLYDEM ++LG+ G T AL +LL+++GSV RA+ FVE+HD+ LW LI H+L++ FL LLD AG +D+ L+ +IP+G +PGLRDKL + D
Sbjct: 592 VFDLVEAQRLYEDVR------DRVATLRAFSEERAADLLVKHVDEFPLGDVDDQLAREEDGGAARLWYLRTCFARLPDLYASADHRARHGDHARLYARLGPVPDAASAGPRADYDSEMLRFLRWSSFVPLTEAYDACAAQEAPLYDEMVWVLGKTGKTAEALALLLDKIGSVKRAVRFVEAHDRSLWSTLIRHALRDARFLGELLDDAGSSSLDVGALLHQIPEGTRVPGLRDKLANVFQD 826
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A5D6XHY4_9STRA (RING-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHY4_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.280e-43 Identity = 94/240 (39.17%), Postives = 136/240 (56.67%), Query Frame = 1
Query: 91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
H F++I +H L+ VQ +V ++ +DR A +L+ E+ V + QLE R+L H YL LF P Y ++ YAP H QV+L AEFAP F LRFL+ S F PLE A C +R PPL+D M YILGRMG +RAL ++L ++ + AI FV+ +D LW +I+ SL ++A + LL A + +D +L+ +IP+ M I L+ KL+ II++Y Q
Sbjct: 650 HAFKLITEHQLWPLVQ------HKVANLMQIDRASAVRMLVAQTEQLKVPDIVKQLEHDRELLHEYLHELFVLRPSEYNAEAYAPLHEAQVALYAEFAPAF-----------LLRFLQTSNFVPLEKAYTYCSERNPPLWDAMIYILGRMGQHKRALDLILTQLHDIHHAIRFVQENDASLWDYVIDLSLTSQANVEQLLQFASQHKIDPIKLIRKIPEDMPIDNLKAKLLDIIANYRIQ 872
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A067BPI1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BPI1_SAPPC) HSP 1 Score: 167 bits (424), Expect = 1.580e-43 Identity = 92/242 (38.02%), Postives = 148/242 (61.16%), Query Frame = 1
Query: 91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRH--PEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
H F++I +H+L+D+VQ ++V+ ++ +DR+ A +L+ ++ V ++ QLE KR+L H YL LF Y + +Y+ H +QV+L AEFAP LRFL+ S F PLE A + C +R PPL+D M +ILGRMG ++AL ++ ++ +V +AI+FVE HD LW LIE SL + + LL++A + +D +++ +IP+ M I GL+DK+++II++Y Q
Sbjct: 567 HAFKLIVEHNLWDSVQ------NKVVNLMLIDRDAALRMLVHQIKSDELKVHAIVKQLEHKRELLHEYLHNLFVHRLVDYNTDKYSSLHEMQVALYAEFAP-----------HVLLRFLQTSSFVPLEKAYKFCSERSPPLWDAMVFILGRMGQHKKALDFIMTQLKNVKQAIQFVEDHDSGLWDYLIEISLSHTECMEELLEYACDHKIDPIKVMQKIPEDMEIAGLKDKVLQIITNYRIQ 791
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A485LHE2_9STRA (Aste57867_21416 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHE2_9STRA) HSP 1 Score: 167 bits (423), Expect = 2.240e-43 Identity = 92/242 (38.02%), Postives = 150/242 (61.98%), Query Frame = 1
Query: 91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRH--PEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
H F++I +H+L+ ++Q ++V+ ++ +DRE A +L+ ++ VS++ QLE KR+L H YL LF Y ++ YA H LQVSL AEFAP + L+FL+ S F PLE A + C +R PPL+D M +ILGRMG ++AL ++ ++ +V +AI+FV+ +D +LW LIE SL N+ ++ LL++A + +D +++ +IP+ M I GL+ K+ +II++Y Q
Sbjct: 597 HAFKLIVEHNLWASIQ------NKVVNLMMIDRESALRMLVHQIKSDQLKVSAIVKQLEHKRELLHEYLHNLFVHRLADYNTESYASLHELQVSLYAEFAPNY-----------LLKFLQTSAFVPLERAYKFCSERSPPLWDAMIFILGRMGQHKKALDFIMTQLQNVKQAIQFVQDNDDELWDYLIEISLTNKEYIEELLEYACDHKIDPIKVMRKIPEDMEIAGLKTKVQQIIANYRIQ 821
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A1V9Y531_9STRA (Vacuolar protein sorting-associated protein 41 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y531_9STRA) HSP 1 Score: 164 bits (415), Expect = 2.610e-42 Identity = 89/242 (36.78%), Postives = 145/242 (59.92%), Query Frame = 1
Query: 91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRH--PEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
H F++I +H L+D +Q +V+ ++ +DR+ A +L+ ++ V ++ QLE KR+L H YL LF Y ++ Y+ H LQV+L AEFAP LRFL+ + F PLE A + C +R PPL+D M +ILGRMG ++AL ++ ++ +V +A+++V+ HD LW L+E SL ++ ++ LL HA + +D +++ +IP+ M IPGL+ K+ +IIS+Y Q
Sbjct: 577 HAFKLIVEHGLWDAIQ------HKVVNLMLIDRDGAMRMLVHQVKADELKVHAIVKQLEHKRELLHEYLHNLFVHRLVDYNTERYSSLHELQVALYAEFAP-----------QMLLRFLQTTSFVPLEKAYKFCSERSPPLWDAMVFILGRMGQHKKALDFIMTQLQNVQQAVQYVQDHDPGLWDYLLEISLAHKESMAELLAHACDHTIDPIKVIKKIPEDMEIPGLKAKVTQIISNYRIQ 801
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A1V9YI15_9STRA (Vacuolar protein sorting-associated protein 41 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YI15_9STRA) HSP 1 Score: 161 bits (408), Expect = 2.320e-41 Identity = 91/246 (36.99%), Postives = 150/246 (60.98%), Query Frame = 1
Query: 91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRH--PEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAE----IPKGMYIPGLRDKLVKIISDYHFQ 810
H F++I +H+L++++Q ++V+ ++ +DR+ A +L+ ++ V S+ QLE KR+L H YL LF Y ++ Y+ H LQ+SL AEFAP F LRFL+ S F PLE A + C +R PPL+D M +ILGRMG ++AL ++ ++ +V +AI+FV+ +D LW LIE SL ++ F++ LL++A + +D +++ + IP+ M I GL+ K+ +II++Y Q
Sbjct: 590 HAFKLIVEHNLWESIQ------NKVVNLMLIDRDAAIRMLVHQIKSDELKVHSIVKQLEHKRELLHEYLHNLFVHRLVDYNTERYSSLHELQISLYAEFAPHF-----------LLRFLQTSSFVPLEKAYKFCSERSPPLWDAMVFILGRMGQHKKALDFIMTQLKNVKQAIQFVQDNDNALWDYLIEISLTHKDFMAELLEYACEHKIDPIKVIKKVQDAIPEDMEITGLKSKVQQIITNYRIQ 818
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A2P6NGE3_9EUKA (RING zinc finger-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NGE3_9EUKA) HSP 1 Score: 161 bits (408), Expect = 2.530e-41 Identity = 99/241 (41.08%), Postives = 143/241 (59.34%), Query Frame = 1
Query: 94 VFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLR-FLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVE-SHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
F IEQ+ LFD+++ D+V ++ D + A ++L+ H E+ ++ V QL G + H YL LF++ P + Q Y H +QV+L AE YN FL FL+ S + LE A + C ++ Y EM YILGRMG ++AL +L+E + V +AIEF+E +D +LW LI++S+KN F+SGLL+H G Y VD RL+ IP GM + GLRD++VKIISDY+ Q
Sbjct: 842 AFETIEQYDLFDSIR------DKVHLLMDYDPKRAVQMLVSHTERVPIAEVVDQLRGYPLMLHNYLHALFEKDPHI--GQTY---HEMQVALYAE------------YNYEFLMTFLKQSNYWALERAYQVCADKK--YYPEMVYILGRMGKVKQALQLLIENIADVKKAIEFIEPQNDDELWEDLIDYSMKNPRFVSGLLEHIGAY-VDPVRLIKRIPIGMEVIGLRDRIVKIISDYNLQ 1056 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12271.1732.1 >prot_H-elongata_contig12271.1732.1 ID=prot_H-elongata_contig12271.1732.1|Name=mRNA_H-elongata_contig12271.1732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp GDERGARSTGVTGGDDHKEQAGSAKGGQYAHVFRMIEQHSLFDTVQARDNback to top mRNA from alignment at H-elongata_contig12271:4048..8128- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12271.1732.1 ID=mRNA_H-elongata_contig12271.1732.1|Name=mRNA_H-elongata_contig12271.1732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4081bp|location=Sequence derived from alignment at H-elongata_contig12271:4048..8128- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12271:4048..8128- >mRNA_H-elongata_contig12271.1732.1 ID=mRNA_H-elongata_contig12271.1732.1|Name=mRNA_H-elongata_contig12271.1732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig12271:4048..8128- (Himanthalia elongata Himel1 dioecious)back to top |