mRNA_H-elongata_contig12269.1730.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12269.1730.1
Unique NamemRNA_H-elongata_contig12269.1730.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12269.1730.1 vs. uniprot
Match: A0A6H5JWH7_9PHAE (Coiled-coil domain-containing protein 153 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.450e-9
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 TVDITRDMTRQYKSMQEELLNRLNQLEGTIEA 96
            T+DITRDMTRQYK MQEELLNR+NQLEGTI+A
Sbjct:   19 TLDITRDMTRQYKGMQEELLNRINQLEGTIQA 50
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BLAST of mRNA_H-elongata_contig12269.1730.1 vs. uniprot
Match: D7G8A4_ECTSI (Coiled-coil domain-containing protein 153 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 7.250e-9
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 TVDITRDMTRQYKSMQEELLNRLNQLEGTIEA 96
            T+DITRDMTRQYK MQEELLNR+NQLEGTI+A
Sbjct:   46 TLDITRDMTRQYKGMQEELLNRINQLEGTIQA 77
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BLAST of mRNA_H-elongata_contig12269.1730.1 vs. uniprot
Match: A0A835YNC3_9STRA (Coiled-coil domain-containing protein 153 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.250e-6
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:   10 ITRDMTRQYKSMQEELLNRLNQLEGTIEA 96
            ITRDMTRQYK MQEELLNR+NQLEG I+A
Sbjct:   50 ITRDMTRQYKGMQEELLNRINQLEGVIQA 78
[Close]
BLAST of mRNA_H-elongata_contig12269.1730.1 vs. uniprot
Match: A0A7S0XCP2_9STRA (Coiled-coil domain-containing protein 153 (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCP2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.860e-5
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 TVDITRDMTRQYKSMQEELLNRLNQLEGTIE 93
            T+DITRDMTRQYKSM+EELL R+N LE T++
Sbjct:   80 TLDITRDMTRQYKSMREELLGRINDLEETVQ 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12269.1730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JWH7_9PHAE4.450e-987.50Coiled-coil domain-containing protein 153 n=1 Tax=... [more]
D7G8A4_ECTSI7.250e-987.50Coiled-coil domain-containing protein 153 n=1 Tax=... [more]
A0A835YNC3_9STRA2.250e-686.21Coiled-coil domain-containing protein 153 n=1 Tax=... [more]
A0A7S0XCP2_9STRA2.860e-574.19Coiled-coil domain-containing protein 153 (Fragmen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12269contigH-elongata_contig12269:4328..5181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12269.1730.1prot_H-elongata_contig12269.1730.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12269 4328..5160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.99503-CDS-H-elongata_contig12269:4327..44141622929721.99503-CDS-H-elongata_contig12269:4327..4414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12269 4328..4414 -
1691679132.6313639-CDS-H-elongata_contig12269:4327..44141691679132.6313639-CDS-H-elongata_contig12269:4327..4414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12269 4328..4414 -
1622929722.0140784-CDS-H-elongata_contig12269:4600..46991622929722.0140784-CDS-H-elongata_contig12269:4600..4699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12269 4601..4699 -
1691679132.640228-CDS-H-elongata_contig12269:4600..46991691679132.640228-CDS-H-elongata_contig12269:4600..4699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12269 4601..4699 -
1622929722.0317683-CDS-H-elongata_contig12269:5088..51601622929722.0317683-CDS-H-elongata_contig12269:5088..5160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12269 5089..5160 -
1691679132.6496599-CDS-H-elongata_contig12269:5088..51601691679132.6496599-CDS-H-elongata_contig12269:5088..5160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12269 5089..5160 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929722.0486026-UTR-H-elongata_contig12269:5160..51811622929722.0486026-UTR-H-elongata_contig12269:5160..5181Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12269 5161..5181 -
1691679132.6590059-UTR-H-elongata_contig12269:5160..51811691679132.6590059-UTR-H-elongata_contig12269:5160..5181Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12269 5161..5181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12269.1730.1

>prot_H-elongata_contig12269.1730.1 ID=prot_H-elongata_contig12269.1730.1|Name=mRNA_H-elongata_contig12269.1730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MTRQYKSMQEELLNRLNQLEGTIEALQDELERSRLELERLEKEKDSAIAA
KDKEISQMRGKMEDMAQEFGDMLKETLDRMRERIEV
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mRNA from alignment at H-elongata_contig12269:4328..5181-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12269.1730.1 ID=mRNA_H-elongata_contig12269.1730.1|Name=mRNA_H-elongata_contig12269.1730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=854bp|location=Sequence derived from alignment at H-elongata_contig12269:4328..5181- (Himanthalia elongata Himel1 dioecious)
ACCGTGGATATTACCCGAGACATGACACGACAGTATAAAAGTATGCAGGA
GGAACTCTTGAATCGTCTTAATCAACTGGAAGGGACAATAGAGGTGAGTA
TACCTCCTGAATTTCTCCAGAGATTCGAATATGAGGTCAGGAGAAAATAA
TATATCGTCCAAAGAACAAAGGTCACATACATGTGTCCCTGAAGGTCTTC
GTTTATGAAATCTCCGAGGTTGTCCATAGAATCGATATAAAGCCACAATA
CATCCAGTTTCGTCCCGCTCAGATACTGAAATATGAAATGCCCCTCCCCC
TATGTTCTTCACGAACTCCTTGGCTCTGGTTTCAATAAGTAAGGTAATAT
CTTCATATCTCATGTATGTGTATATAGGGCGGAGAGATTCGCGGCAGTCG
ATCCTCAATTCCAGTAAGACCATGCCTTCAAGCTCCCCGTCTTGCTCCCT
TGTAACACCGCGAGTTCGATTGTGCCGTCCAGGCCCTCCAAGATGAGCTG
GAACGGTCACGCCTGGAGCTAGAGCGCCTGGAAAAAGAAAAAGATTCCGC
GATCGCCGCCAAGGACAAGGAAATATCGCAGGTCAGAAGGGACCAACCAA
CACACACACAAAGATGAATATGGACTTTCTCCACAGCCTCATCGTGGGTT
CCCGCTGTCACAAGAAAATGTACATTAACTAACGAGCCGCGAGAAGCACT
ATTGTTGGGTTATCTCTTTTTTGTTCTTCTTGTATTTGCCTAATGTGCTG
ACCTTATCGTGCAGTAGATGAGAGGGAAAATGGAGGACATGGCGCAAGAA
TTTGGGGACATGCTGAAGGAAACGCTGGATCGAATGCGAGAGAGAATTGA
GGTA
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Coding sequence (CDS) from alignment at H-elongata_contig12269:4328..5181-

>mRNA_H-elongata_contig12269.1730.1 ID=mRNA_H-elongata_contig12269.1730.1|Name=mRNA_H-elongata_contig12269.1730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig12269:4328..5181- (Himanthalia elongata Himel1 dioecious)
ATGACACGACAGTATAAAAGTATGCAGGAGGAACTCTTGAATCGTCTTAA
TCAACTGGAAGGGACAATAGAGATGACACGACAGTATAAAAGTATGCAGG
AGGAACTCTTGAATCGTCTTAATCAACTGGAAGGGACAATAGAGGCCCTC
CAAGATGAGCTGGAACGGTCACGCCTGGAGCTAGAGCGCCTGGAAAAAGA
AAAAGATTCCGCGATCGCCGCCAAGGACAAGGAAATATCGCAGGCCCTCC
AAGATGAGCTGGAACGGTCACGCCTGGAGCTAGAGCGCCTGGAAAAAGAA
AAAGATTCCGCGATCGCCGCCAAGGACAAGGAAATATCGCAGATGAGAGG
GAAAATGGAGGACATGGCGCAAGAATTTGGGGACATGCTGAAGGAAACGC
TGGATCGAATGCGAGAGAGAATTGAGGTAATGAGAGGGAAAATGGAGGAC
ATGGCGCAAGAATTTGGGGACATGCTGAAGGAAACGCTGGATCGAATGCG
AGAGAGAATTGAGGTA
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