prot_H-elongata_contig12268.1728.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12268.1728.1
Unique Nameprot_H-elongata_contig12268.1728.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length143
Homology
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A6H5L4L3_9PHAE (ODC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L3_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 9.920e-62
Identity = 93/135 (68.89%), Postives = 109/135 (80.74%), Query Frame = 0
Query:    2 VRDSAGE--------GSDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRRVLNARAQ 128
            +RD+A E        GS +S  F AVD+ECVLHKYRRWH CFP +KPFYAVKCNPN EVV  LA T GCGFDCASPAE+D VL CG DP RIIYANPCK++AAL+HALSAG+ T+TFDSK+EL KIRR+L++RA+
Sbjct:   72 LRDTADESTGDDLDGGSASSDVFFAVDVECVLHKYRRWHDCFPRVKPFYAVKCNPNSEVVRVLAATPGCGFDCASPAEMDQVLECGVDPSRIIYANPCKDLAALEHALSAGVATMTFDSKDELYKIRRLLDSRAK 206          
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: D7G2S0_ECTSI (Ornithine decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S0_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 5.150e-58
Identity = 91/122 (74.59%), Postives = 103/122 (84.43%), Query Frame = 0
Query:    7 GEGSDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRRVLNARAQ 128
            G GS +S  F AVDLECVLHKYRRWH CFP +KPFYAVKCNPN EVV  LA T GCGFDCASPAE+D VL CG DP RIIYANPCK++AAL+HALSAG+ T+TFDSK+EL KIRR+L+ RA+
Sbjct:   85 GGGSTSSDVFFAVDLECVLHKYRRWHDCFPRVKPFYAVKCNPNSEVVRVLAATPGCGFDCASPAEMDQVLECGVDPSRIIYANPCKDLAALEHALSAGVATMTFDSKDELYKIRRLLDTRAK 206          
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A3B4X1M1_SERLL (Ornithine decarboxylase 1 n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4X1M1_SERLL)

HSP 1 Score: 118 bits (295), Expect = 3.080e-31
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   11 DTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRRVL 123
            D   AF   DL  V+ K+ RW +  P + PFYAVKCN +R +V+ LA + G GFDCAS  EI LV   G DP RIIYANPCK+V+ +++A + GI  +TFDS+ EL+K+ R L
Sbjct:   25 DDRDAFYVCDLGDVVKKHLRWMRALPRVTPFYAVKCNDSRAIVMTLA-SLGSGFDCASKTEIQLVQSLGVDPSRIIYANPCKQVSQIKYASAHGIQMMTFDSEVELMKVARCL 136          
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A162BRP4_DICLA (Ornithine decarboxylase (Fragment) n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A162BRP4_DICLA)

HSP 1 Score: 116 bits (290), Expect = 2.330e-30
Identity = 61/123 (49.59%), Postives = 78/123 (63.41%), Query Frame = 0
Query:    1 MVRDSAGEGS--DTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 121
            +V     E S  D   AF   DL  VL K  RW +  P + PFYAVKCN +R VV+ LA + G GFDCAS  EI LV   G DP RIIYANPCK+V+ +++A + G+  +TFDS+ EL+K+ R
Sbjct:   23 IVEQKINESSMTDDRDAFYVXDLGDVLKKQLRWARALPRVTPFYAVKCNDSRAVVMTLA-SLGTGFDCASKMEIQLVQSLGVDPNRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELMKVAR 144          
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: UPI0015B05017 (ornithine decarboxylase-like isoform X1 n=3 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B05017)

HSP 1 Score: 120 bits (302), Expect = 1.860e-29
Identity = 60/112 (53.57%), Postives = 76/112 (67.86%), Query Frame = 0
Query:   10 SDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 121
            SD   AF   DL  VL K+ RW +  P + PFYAVKCN +R VV+ LA T G GFDCAS  EI LV   G DP RIIYANPCK+V+ +++A + G+  +TFDS+ EL+K+ R
Sbjct:   61 SDDKDAFYVADLGEVLKKHLRWVRALPRVTPFYAVKCNDSRAVVMTLA-TLGTGFDCASKNEIQLVQSLGVDPSRIIYANPCKQVSHIKYAFAHGVQMMTFDSEVELMKVAR 171          
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A3B4BZP8_PYGNA (Ornithine decarboxylase 1 n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4BZP8_PYGNA)

HSP 1 Score: 120 bits (300), Expect = 2.740e-29
Identity = 58/112 (51.79%), Postives = 76/112 (67.86%), Query Frame = 0
Query:   10 SDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 121
            SD   AF   DL  VL K+ RW +  P + PFYAVKCN +R VV+ LA + G GFDCAS  EI +V   G DP RIIYANPCK+V+ +++A + G+  +TFDS+ EL+K+ R
Sbjct:   34 SDDKDAFYVADLGDVLKKHLRWARALPRVTPFYAVKCNDSRAVVMTLA-SLGAGFDCASKTEIQIVQSLGVDPSRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELMKVAR 144          
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: UPI001F074CE3 (ornithine decarboxylase n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F074CE3)

HSP 1 Score: 120 bits (300), Expect = 2.740e-29
Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 0
Query:   10 SDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 121
            SD   AF   DL  VL K+ RW +  P + PFYAVKCN +R VV+ LA + G GFDCAS  EI LV   G DP RIIYANPCK+V+ +++A + G+  +TFDS+ EL+K+ R
Sbjct:   34 SDDKDAFYVCDLGDVLKKHLRWARALPRVMPFYAVKCNDSRAVVMTLA-SLGAGFDCASKTEIHLVQSIGVDPSRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELMKVAR 144          
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: I3KU19_ORENI (Uncharacterized protein n=25 Tax=Percomorphaceae TaxID=1489872 RepID=I3KU19_ORENI)

HSP 1 Score: 120 bits (300), Expect = 3.220e-29
Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = 0
Query:    1 MVRDSAGEGS--DTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 121
            +V     E S  D   AF   DL  V+ K+ RW +  P ++PFYAVKCN +R VV+ LA T G GFDCAS  EI LV   G DP RIIYANPCK+V+ +++A + G+  +TFDS+ EL+K+ R
Sbjct:   39 IVEQKINESSMTDDRDAFYVCDLGDVVKKHLRWARALPRVRPFYAVKCNDSRAVVMTLA-TLGTGFDCASKTEIQLVQSLGVDPSRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELMKVAR 160          
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: UPI001C41954B (ornithine decarboxylase-like n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C41954B)

HSP 1 Score: 119 bits (298), Expect = 4.590e-29
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 0
Query:   10 SDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKI 119
            +D   AF   DL  VL K+ RW +  P + P+YAVKCN  REVV+ LA + G GFDCAS  EI LV   G DP RIIYANPCK+V+ +++A +  +  +TFDSKEEL+K+
Sbjct:   34 TDDRDAFYVCDLGDVLKKHLRWVRALPRVTPYYAVKCNDTREVVMTLA-SLGTGFDCASKTEIQLVQSLGVDPSRIIYANPCKQVSHIKYASAHAVQMMTFDSKEELVKV 142          
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A3Q1BPC0_AMPOC (Ornithine decarboxylase 1 n=47 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q1BPC0_AMPOC)

HSP 1 Score: 119 bits (298), Expect = 5.280e-29
Identity = 62/123 (50.41%), Postives = 79/123 (64.23%), Query Frame = 0
Query:    1 MVRDSAGEGS--DTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 121
            +V     E S  D   AF   DL  VL K+ RW +  P + PFYAVKCN +R VV+ LA + G GFDCAS  EI LV   G DP RIIYANPCK+V+ +++A + G+  +TFDS+ ELLK+ R
Sbjct:   23 IVEQKINESSMTDDRDAFYICDLGDVLKKHLRWARALPRVTPFYAVKCNDSRAVVMTLA-SLGAGFDCASKTEIQLVQSLGVDPSRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELLKVAR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4L3_9PHAE9.920e-6268.89ODC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G2S0_ECTSI5.150e-5874.59Ornithine decarboxylase n=1 Tax=Ectocarpus silicul... [more]
A0A3B4X1M1_SERLL3.080e-3151.33Ornithine decarboxylase 1 n=1 Tax=Seriola lalandi ... [more]
A0A162BRP4_DICLA2.330e-3049.59Ornithine decarboxylase (Fragment) n=1 Tax=Dicentr... [more]
UPI0015B050171.860e-2953.57ornithine decarboxylase-like isoform X1 n=3 Tax=An... [more]
A0A3B4BZP8_PYGNA2.740e-2951.79Ornithine decarboxylase 1 n=2 Tax=Serrasalmidae Ta... [more]
UPI001F074CE32.740e-2952.68ornithine decarboxylase n=1 Tax=Hypomesus transpac... [more]
I3KU19_ORENI3.220e-2949.59Uncharacterized protein n=25 Tax=Percomorphaceae T... [more]
UPI001C41954B4.590e-2952.73ornithine decarboxylase-like n=1 Tax=Solea senegal... [more]
A0A3Q1BPC0_AMPOC5.280e-2950.41Ornithine decarboxylase 1 n=47 Tax=Percomorphaceae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000183Ornithine/DAP/Arg decarboxylasePRINTSPR01179ODADCRBXLASEcoord: 63..75
score: 50.84
coord: 42..60
score: 39.14
IPR002433Ornithine decarboxylasePRINTSPR01182ORNDCRBXLASEcoord: 85..109
score: 42.4
coord: 14..38
score: 29.07
coord: 40..67
score: 36.67
IPR002433Ornithine decarboxylasePANTHERPTHR11482ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASEcoord: 10..122
IPR022644Orn/DAP/Arg decarboxylase 2, N-terminalPFAMPF02784Orn_Arg_deC_Ncoord: 24..125
e-value: 1.7E-30
score: 106.2
IPR029066PLP-binding barrelGENE3D3.20.20.10coord: 22..122
e-value: 2.5E-35
score: 123.9
IPR029066PLP-binding barrelSUPERFAMILY51419PLP-binding barrelcoord: 16..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12268contigH-elongata_contig12268:4928..6888 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12268.1728.1mRNA_H-elongata_contig12268.1728.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12268 4928..6893 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12268.1728.1 ID=prot_H-elongata_contig12268.1728.1|Name=mRNA_H-elongata_contig12268.1728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MVRDSAGEGSDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNR
EVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHA
LSAGITTVTFDSKEELLKIRRVLNARAQQASIPDRDAARKEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000183Orn/DAP/Arg_de-COase
IPR002433Orn_de-COase
IPR022644De-COase2_N
IPR029066PLP-binding_barrel