mRNA_H-elongata_contig12268.1728.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A6H5L4L3_9PHAE (ODC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L3_9PHAE) HSP 1 Score: 198 bits (503), Expect = 7.280e-62 Identity = 94/137 (68.61%), Postives = 110/137 (80.29%), Query Frame = 3
Query: 3 AMVRDSAGE--------GSDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRRVLNARAQ 389
A +RD+A E GS +S F AVD+ECVLHKYRRWH CFP +KPFYAVKCNPN EVV LA T GCGFDCASPAE+D VL CG DP RIIYANPCK++AAL+HALSAG+ T+TFDSK+EL KIRR+L++RA+
Sbjct: 70 AHLRDTADESTGDDLDGGSASSDVFFAVDVECVLHKYRRWHDCFPRVKPFYAVKCNPNSEVVRVLAATPGCGFDCASPAEMDQVLECGVDPSRIIYANPCKDLAALEHALSAGVATMTFDSKDELYKIRRLLDSRAK 206
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: D7G2S0_ECTSI (Ornithine decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S0_ECTSI) HSP 1 Score: 199 bits (507), Expect = 3.840e-58 Identity = 95/137 (69.34%), Postives = 109/137 (79.56%), Query Frame = 3
Query: 3 AMVRDSAGE--------GSDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRRVLNARAQ 389
A +RD+A E GS +S F AVDLECVLHKYRRWH CFP +KPFYAVKCNPN EVV LA T GCGFDCASPAE+D VL CG DP RIIYANPCK++AAL+HALSAG+ T+TFDSK+EL KIRR+L+ RA+
Sbjct: 70 ARLRDTADESTGGDLGGGSTSSDVFFAVDLECVLHKYRRWHDCFPRVKPFYAVKCNPNSEVVRVLAATPGCGFDCASPAEMDQVLECGVDPSRIIYANPCKDLAALEHALSAGVATMTFDSKDELYKIRRLLDTRAK 206
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A3B4X1M1_SERLL (Ornithine decarboxylase 1 n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4X1M1_SERLL) HSP 1 Score: 118 bits (295), Expect = 3.190e-31 Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 3
Query: 36 DTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRRVL 374
D AF DL V+ K+ RW + P + PFYAVKCN +R +V+ LA + G GFDCAS EI LV G DP RIIYANPCK+V+ +++A + GI +TFDS+ EL+K+ R L
Sbjct: 25 DDRDAFYVCDLGDVVKKHLRWMRALPRVTPFYAVKCNDSRAIVMTLA-SLGSGFDCASKTEIQLVQSLGVDPSRIIYANPCKQVSQIKYASAHGIQMMTFDSEVELMKVARCL 136
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A162BRP4_DICLA (Ornithine decarboxylase (Fragment) n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A162BRP4_DICLA) HSP 1 Score: 116 bits (290), Expect = 2.420e-30 Identity = 61/123 (49.59%), Postives = 78/123 (63.41%), Query Frame = 3
Query: 6 MVRDSAGEGS--DTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 368
+V E S D AF DL VL K RW + P + PFYAVKCN +R VV+ LA + G GFDCAS EI LV G DP RIIYANPCK+V+ +++A + G+ +TFDS+ EL+K+ R
Sbjct: 23 IVEQKINESSMTDDRDAFYVXDLGDVLKKQLRWARALPRVTPFYAVKCNDSRAVVMTLA-SLGTGFDCASKMEIQLVQSLGVDPNRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELMKVAR 144
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: UPI0015B05017 (ornithine decarboxylase-like isoform X1 n=3 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B05017) HSP 1 Score: 120 bits (302), Expect = 1.920e-29 Identity = 60/112 (53.57%), Postives = 76/112 (67.86%), Query Frame = 3
Query: 33 SDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 368
SD AF DL VL K+ RW + P + PFYAVKCN +R VV+ LA T G GFDCAS EI LV G DP RIIYANPCK+V+ +++A + G+ +TFDS+ EL+K+ R
Sbjct: 61 SDDKDAFYVADLGEVLKKHLRWVRALPRVTPFYAVKCNDSRAVVMTLA-TLGTGFDCASKNEIQLVQSLGVDPSRIIYANPCKQVSHIKYAFAHGVQMMTFDSEVELMKVAR 171
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A3B4BZP8_PYGNA (Ornithine decarboxylase 1 n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4BZP8_PYGNA) HSP 1 Score: 120 bits (300), Expect = 2.840e-29 Identity = 58/112 (51.79%), Postives = 76/112 (67.86%), Query Frame = 3
Query: 33 SDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 368
SD AF DL VL K+ RW + P + PFYAVKCN +R VV+ LA + G GFDCAS EI +V G DP RIIYANPCK+V+ +++A + G+ +TFDS+ EL+K+ R
Sbjct: 34 SDDKDAFYVADLGDVLKKHLRWARALPRVTPFYAVKCNDSRAVVMTLA-SLGAGFDCASKTEIQIVQSLGVDPSRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELMKVAR 144
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: UPI001F074CE3 (ornithine decarboxylase n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F074CE3) HSP 1 Score: 120 bits (300), Expect = 2.840e-29 Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 3
Query: 33 SDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 368
SD AF DL VL K+ RW + P + PFYAVKCN +R VV+ LA + G GFDCAS EI LV G DP RIIYANPCK+V+ +++A + G+ +TFDS+ EL+K+ R
Sbjct: 34 SDDKDAFYVCDLGDVLKKHLRWARALPRVMPFYAVKCNDSRAVVMTLA-SLGAGFDCASKTEIHLVQSIGVDPSRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELMKVAR 144
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: I3KU19_ORENI (Uncharacterized protein n=25 Tax=Percomorphaceae TaxID=1489872 RepID=I3KU19_ORENI) HSP 1 Score: 120 bits (300), Expect = 3.340e-29 Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = 3
Query: 6 MVRDSAGEGS--DTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 368
+V E S D AF DL V+ K+ RW + P ++PFYAVKCN +R VV+ LA T G GFDCAS EI LV G DP RIIYANPCK+V+ +++A + G+ +TFDS+ EL+K+ R
Sbjct: 39 IVEQKINESSMTDDRDAFYVCDLGDVVKKHLRWARALPRVRPFYAVKCNDSRAVVMTLA-TLGTGFDCASKTEIQLVQSLGVDPSRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELMKVAR 160
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: UPI001C41954B (ornithine decarboxylase-like n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C41954B) HSP 1 Score: 119 bits (298), Expect = 4.760e-29 Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 3
Query: 33 SDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKI 362
+D AF DL VL K+ RW + P + P+YAVKCN REVV+ LA + G GFDCAS EI LV G DP RIIYANPCK+V+ +++A + + +TFDSKEEL+K+
Sbjct: 34 TDDRDAFYVCDLGDVLKKHLRWVRALPRVTPYYAVKCNDTREVVMTLA-SLGTGFDCASKTEIQLVQSLGVDPSRIIYANPCKQVSHIKYASAHAVQMMTFDSKEELVKV 142
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Match: A0A3Q1BPC0_AMPOC (Ornithine decarboxylase 1 n=47 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q1BPC0_AMPOC) HSP 1 Score: 119 bits (298), Expect = 5.470e-29 Identity = 62/123 (50.41%), Postives = 79/123 (64.23%), Query Frame = 3
Query: 6 MVRDSAGEGS--DTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNREVVLALAMTSGCGFDCASPAEIDLVLGCGADPCRIIYANPCKEVAALQHALSAGITTVTFDSKEELLKIRR 368
+V E S D AF DL VL K+ RW + P + PFYAVKCN +R VV+ LA + G GFDCAS EI LV G DP RIIYANPCK+V+ +++A + G+ +TFDS+ ELLK+ R
Sbjct: 23 IVEQKINESSMTDDRDAFYICDLGDVLKKHLRWARALPRVTPFYAVKCNDSRAVVMTLA-SLGAGFDCASKTEIQLVQSLGVDPSRIIYANPCKQVSQIKYASAHGVQMMTFDSEVELLKVAR 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12268.1728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12268.1728.1 >prot_H-elongata_contig12268.1728.1 ID=prot_H-elongata_contig12268.1728.1|Name=mRNA_H-elongata_contig12268.1728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp MVRDSAGEGSDTSGAFLAVDLECVLHKYRRWHQCFPGIKPFYAVKCNPNRback to top mRNA from alignment at H-elongata_contig12268:4928..6893- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12268.1728.1 ID=mRNA_H-elongata_contig12268.1728.1|Name=mRNA_H-elongata_contig12268.1728.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1966bp|location=Sequence derived from alignment at H-elongata_contig12268:4928..6893- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12268:4928..6893- >mRNA_H-elongata_contig12268.1728.1 ID=mRNA_H-elongata_contig12268.1728.1|Name=mRNA_H-elongata_contig12268.1728.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig12268:4928..6893- (Himanthalia elongata Himel1 dioecious)back to top |