prot_H-elongata_contig122646.1726.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig122646.1726.1
Unique Nameprot_H-elongata_contig122646.1726.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A6H5L4W0_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W0_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 9.320e-66
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 0
Query:    2 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            AVERF DVS RLK+SGQ+FEQSKQNAAGAVLKFNE K  RY++FMQAY  VS+NLNTIYKDLT SSKHPLGGNA+LSLDN EEPYLGGVKFNAMPPMKRFRDM+QLSGGEKTVAAL LLFA+H
Sbjct:   17 AVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQLRYDTFMQAYNLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 139          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.380e-59
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 0
Query:    2 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            AVERF DVS RLK+SGQ+FEQSKQNAAGAVLKFNE K  RY++FMQAY  VS+NLNTIYKDLT SSKHPLGGNA+LSLDN EEPYLGGVKFNAMPPMKRFRDM+QLSGGEKTVAAL LLFA+H
Sbjct: 1094 AVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYNLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 1216          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2AZM0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZM0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.030e-49
Identity = 84/123 (68.29%), Postives = 95/123 (77.24%), Query Frame = 0
Query:    2 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            A ERFDDV+ RLKSS   +E SK  A  A   FNE K  R+  F   + H+S+ L TIY+DLT SSKHPLGGNAYLSLD+ EEPY GG+K+N MPPMKRFRDMDQLSGGEKTVAALALLFA+H
Sbjct:  113 AFERFDDVTTRLKSSLAEYEISKDEARDAAASFNEVKSKRHELFTACFEHISKELKTIYRDLTKSSKHPLGGNAYLSLDDTEEPYAGGIKYNTMPPMKRFRDMDQLSGGEKTVAALALLFAIH 235          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S3YCQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCQ0_HETAK)

HSP 1 Score: 164 bits (416), Expect = 2.420e-47
Identity = 77/123 (62.60%), Postives = 100/123 (81.30%), Query Frame = 0
Query:    2 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            A E+FD+++ RLK SG+ F  +K NA  + L FN+ K+ R+ +FMQ + H+ + LN+ Y+DLT SSKHPLGG AYL+LD+ EEPYL GVKFNAMPPMKRFRDM+QLSGGE+TVA+LALLF++H
Sbjct:  159 AFEKFDNLTDRLKDSGKDFSNAKDNAQASALAFNKIKEKRHTAFMQCFNHIKDTLNSTYRDLTKSSKHPLGGTAYLTLDDPEEPYLAGVKFNAMPPMKRFRDMEQLSGGERTVASLALLFSVH 281          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A8J9TE18_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TE18_PHATR)

HSP 1 Score: 154 bits (389), Expect = 4.070e-45
Identity = 77/123 (62.60%), Postives = 92/123 (74.80%), Query Frame = 0
Query:    2 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            A E F  ++ RLK S   +E+SK+ +A A   F   K  R   F +A+ H+ E L TIY D+T SSKHPLGGNAYLSLD+ EEPY GG+KFNAMPPMKRFRDM+QLSGGEKTVAAL+LLFA+H
Sbjct:    1 ASEAFSTITDRLKGSSSDYEKSKEKSAKAAQAFQRVKAKRAKLFNEAFNHIDEALKTIYTDMTKSSKHPLGGNAYLSLDDAEEPYKGGIKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIH 123          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2RI11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI11_9STRA)

HSP 1 Score: 162 bits (410), Expect = 7.720e-44
Identity = 77/123 (62.60%), Postives = 99/123 (80.49%), Query Frame = 0
Query:    2 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            A ERF+DVS R K+S + F+Q++++A  A   FN+ K  R+++FM  + HV+  L TIY+DLT    HPLGGNAYLSLD+ EEP+LGG+K+NAMPP+KRFRDM+QLSGGEKTVAALALLFA+H
Sbjct:  798 ATERFEDVSVRHKASTEEFDQARESARDAASLFNDVKQKRHDAFMACFNHVAHELQTIYQDLTKDPNHPLGGNAYLSLDDSEEPFLGGIKYNAMPPLKRFRDMEQLSGGEKTVAALALLFAIH 920          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A6G0XYC9_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYC9_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.130e-43
Identity = 78/123 (63.41%), Postives = 98/123 (79.67%), Query Frame = 0
Query:    2 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            A+E++D++ AR+    +  E+ K NA  A  KF+E KD RY  FM+A+ HVSE ++  YK+LT SSKHPLGG AYLSL+N EEPYL G+K+NAMPPMKRFR+M+QLSGGEKTVAALALLFA+H
Sbjct: 1043 ALEKYDEIQARIAKEEEELEKIKANATEACQKFDEVKDARYERFMEAFNHVSECIDETYKNLTKSSKHPLGGTAYLSLENSEEPYLHGMKYNAMPPMKRFREMEQLSGGEKTVAALALLFAIH 1165          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2SPG9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPG9_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.140e-43
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 0
Query:    2 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            A ER+DDV+ RLK +      ++  +    L F + K +RY  FM  + HVS  ++ +Y++LT SS+HPLGGNAYLSLDN EEPYLGG+K+NAMPP KRFRDMDQLSGGEKTVAALALLFA+H
Sbjct:  169 ARERYDDVAMRLKDTDAKLSLARVQSRKIELSFEKIKQSRYKKFMHMFEHVSNTIDKVYRELTKSSRHPLGGNAYLSLDNTEEPYLGGIKYNAMPPTKRFRDMDQLSGGEKTVAALALLFAVH 291          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2V1Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 8.930e-43
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 0
Query:   36 EAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            E K  R++ FM+ + HVSENL+ IYKDLT S+KHPLGGNAYLSLD+QEEP+ GGVKFNAMPPMKRFRDM+QLSGGEKTVAALALLFA+H
Sbjct:    1 EVKQKRHDLFMECFNHVSENLSEIYKDLTKSTKHPLGGNAYLSLDDQEEPFHGGVKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIH 89          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A2R5GJT3_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJT3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.580e-43
Identity = 77/123 (62.60%), Postives = 94/123 (76.42%), Query Frame = 0
Query:    2 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 124
            A ERF+DVS+RLK + +   +++Q +    L F   K  RY  FM  + HVS  +  IY++LT SS+HPLGGNAYLSLDN +EPYLGG+K+NAMPP KRFRDMDQLSGGEKTVAALALLFA+H
Sbjct: 1134 ANERFEDVSSRLKDTDEKLSRARQQSREVELNFETVKQERYEKFMHMFEHVSSTIEKIYRELTKSSRHPLGGNAYLSLDNTDEPYLGGIKYNAMPPTKRFRDMDQLSGGEKTVAALALLFAIH 1256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4W0_9PHAE9.320e-6685.37SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LRP2_ECTSI1.380e-5985.37Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2AZM0_9STRA5.030e-4968.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3YCQ0_HETAK2.420e-4762.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J9TE18_PHATR4.070e-4562.60Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A7S2RI11_9STRA7.720e-4462.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0XYC9_9STRA5.130e-4363.41Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2SPG9_9STRA5.140e-4360.98Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2V1Q0_9STRA8.930e-4378.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2R5GJT3_9STRA9.580e-4362.60Structural maintenance of chromosomes protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..125
e-value: 2.7E-23
score: 85.1
NoneNo IPR availablePANTHERPTHR18937STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBERcoord: 2..124
IPR028468Structural maintenance of chromosomes protein 1PANTHERPTHR18937:SF12STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEINcoord: 2..124
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122646contigH-elongata_contig122646:408..1432 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122646.1726.1mRNA_H-elongata_contig122646.1726.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig122646 408..1432 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig122646.1726.1 ID=prot_H-elongata_contig122646.1726.1|Name=mRNA_H-elongata_contig122646.1726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
QAVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYT
HVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKR
FRDMDQLSGGEKTVAALALLFALHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028468Smc1
IPR027417P-loop_NTPase