mRNA_H-elongata_contig101943.173.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101943.173.1
Unique NamemRNA_H-elongata_contig101943.173.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101943.173.1 vs. uniprot
Match: A0A3S4Q8K1_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4Q8K1_9ACAR)

HSP 1 Score: 55.5 bits (132), Expect = 1.300e-6
Identity = 28/85 (32.94%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   70 WVTDSGFSRFMTPSADYMVNYR--EGGGVVRIADGRVMPIEGTGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMDDRGH 318
            W+ DSG S  ++   +++ +++  E    +RIA+ +V+ +EG GN+  + + GK W  A + NV +VP  G NL S+    D+G+
Sbjct:   10 WIADSGASEHISFHKEWLQDFKPIETKRELRIANNKVINVEGVGNILATVFDGKRWSNATIYNVLYVPESGVNLFSIGAAADKGY 94
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BLAST of mRNA_H-elongata_contig101943.173.1 vs. uniprot
Match: A0A1B6E9D0_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E9D0_9HEMI)

HSP 1 Score: 52.0 bits (123), Expect = 2.180e-5
Identity = 26/82 (31.71%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:   70 WVTDSGFSRFMTPSADYMVNYREGGGVVRIADGRVMPIEGTGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMDDRG 315
            W  DSG +  M+P    + N+R+    ++IA+  ++  EG G++ +      +  +  L NV++VP L  NLLS+K++ D+G
Sbjct:  289 WYLDSGATVHMSPHKHLIKNFRQSSKGIKIANKEIIQTEGQGDIEIKVKLKNEVRQIKLKNVSYVPQLAANLLSIKVLTDKG 370
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101943.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3S4Q8K1_9ACAR1.300e-632.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A1B6E9D0_9HEMI2.180e-531.71Uncharacterized protein (Fragment) n=1 Tax=Clastop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101943contigH-elongata_contig101943:303..629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.3441334-CDS-H-elongata_contig101943:302..6291622929559.3441334-CDS-H-elongata_contig101943:302..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101943 303..629 -
1691679070.0614007-CDS-H-elongata_contig101943:302..6291691679070.0614007-CDS-H-elongata_contig101943:302..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101943 303..629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101943.173.1prot_H-elongata_contig101943.173.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101943 303..629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101943.173.1

>prot_H-elongata_contig101943.173.1 ID=prot_H-elongata_contig101943.173.1|Name=mRNA_H-elongata_contig101943.173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MAIEVEKNVLPVGELSLEAMVKRWVTDSGFSRFMTPSADYMVNYREGGGV
VRIADGRVMPIEGTGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKM
MDDRGHKYV
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mRNA from alignment at H-elongata_contig101943:303..629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101943.173.1 ID=mRNA_H-elongata_contig101943.173.1|Name=mRNA_H-elongata_contig101943.173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig101943:303..629- (Himanthalia elongata Himel1 dioecious)
ATGGCCATCGAAGTGGAAAAGAATGTTCTCCCGGTGGGTGAGCTATCACT
GGAAGCTATGGTTAAACGATGGGTCACTGATAGTGGCTTCTCACGTTTCA
TGACGCCTTCCGCTGATTATATGGTCAACTATCGTGAGGGTGGAGGTGTG
GTAAGAATTGCCGACGGCCGAGTGATGCCGATCGAAGGCACTGGGAATTT
ACCGATGAGCTTCTGGTCTGGTAAGGACTGGGTAAAGGCAATTTTACCGA
ATGTCGCTCATGTTCCATTACTGGGATACAATTTGCTGTCTCTGAAGATG
ATGGATGATCGTGGTCACAAGTACGTT
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Coding sequence (CDS) from alignment at H-elongata_contig101943:303..629-

>mRNA_H-elongata_contig101943.173.1 ID=mRNA_H-elongata_contig101943.173.1|Name=mRNA_H-elongata_contig101943.173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig101943:303..629- (Himanthalia elongata Himel1 dioecious)
ATGGCCATCGAAGTGGAAAAGAATGTTCTCCCGGTGGGTGAGCTATCACT
GGAAGCTATGGTTAAACGATGGGTCACTGATAGTGGCTTCTCACGTTTCA
TGACGCCTTCCGCTGATTATATGGTCAACTATCGTGAGGGTGGAGGTGTG
GTAAGAATTGCCGACGGCCGAGTGATGCCGATCGAAGGCACTGGGAATTT
ACCGATGAGCTTCTGGTCTGGTAAGGACTGGGTAAAGGCAATTTTACCGA
ATGTCGCTCATGTTCCATTACTGGGATACAATTTGCTGTCTCTGAAGATG
ATGGATGATCGTGGTCACAAGTACGTTATGGCCATCGAAGTGGAAAAGAA
TGTTCTCCCGGTGGGTGAGCTATCACTGGAAGCTATGGTTAAACGATGGG
TCACTGATAGTGGCTTCTCACGTTTCATGACGCCTTCCGCTGATTATATG
GTCAACTATCGTGAGGGTGGAGGTGTGGTAAGAATTGCCGACGGCCGAGT
GATGCCGATCGAAGGCACTGGGAATTTACCGATGAGCTTCTGGTCTGGTA
AGGACTGGGTAAAGGCAATTTTACCGAATGTCGCTCATGTTCCATTACTG
GGATACAATTTGCTGTCTCTGAAGATGATGGATGATCGTGGTCACAAGTA
CGTT
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