prot_H-elongata_contig101943.173.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig101943.173.1
Unique Nameprot_H-elongata_contig101943.173.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length109
Homology
BLAST of mRNA_H-elongata_contig101943.173.1 vs. uniprot
Match: A0A3S4Q8K1_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4Q8K1_9ACAR)

HSP 1 Score: 55.5 bits (132), Expect = 1.300e-6
Identity = 28/85 (32.94%), Postives = 50/85 (58.82%), Query Frame = 0
Query:   24 WVTDSGFSRFMTPSADYMVNYR--EGGGVVRIADGRVMPIEGTGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMDDRGH 106
            W+ DSG S  ++   +++ +++  E    +RIA+ +V+ +EG GN+  + + GK W  A + NV +VP  G NL S+    D+G+
Sbjct:   10 WIADSGASEHISFHKEWLQDFKPIETKRELRIANNKVINVEGVGNILATVFDGKRWSNATIYNVLYVPESGVNLFSIGAAADKGY 94          
BLAST of mRNA_H-elongata_contig101943.173.1 vs. uniprot
Match: A0A2K3JT83_TRIPR (Copia LTR rider (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JT83_TRIPR)

HSP 1 Score: 52.0 bits (123), Expect = 1.750e-5
Identity = 29/85 (34.12%), Postives = 51/85 (60.00%), Query Frame = 0
Query:   27 DSGFSRFMTPSADY--MVNYREGGGVVRIADGRVMPIEGTGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMDDRGHKYV 109
            DSG S  M P  +Y  +++ +EGG VVR+++ +   I+GTG + +  +  +D+   +L NV ++P L  NL+S+ M D  G+  +
Sbjct:    2 DSGCSYHMCPRKEYFEILDLKEGG-VVRLSNNKACKIQGTGTIRLKMFDDRDF---LLKNVXYIPELKRNLISISMFDGLGYSTI 82          
BLAST of mRNA_H-elongata_contig101943.173.1 vs. uniprot
Match: A0A1B6E9D0_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E9D0_9HEMI)

HSP 1 Score: 52.0 bits (123), Expect = 2.180e-5
Identity = 26/82 (31.71%), Postives = 47/82 (57.32%), Query Frame = 0
Query:   24 WVTDSGFSRFMTPSADYMVNYREGGGVVRIADGRVMPIEGTGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMDDRG 105
            W  DSG +  M+P    + N+R+    ++IA+  ++  EG G++ +      +  +  L NV++VP L  NLLS+K++ D+G
Sbjct:  289 WYLDSGATVHMSPHKHLIKNFRQSSKGIKIANKEIIQTEGQGDIEIKVKLKNEVRQIKLKNVSYVPQLAANLLSIKVLTDKG 370          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101943.173.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3S4Q8K1_9ACAR1.300e-632.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3JT83_TRIPR1.750e-534.12Copia LTR rider (Fragment) n=1 Tax=Trifolium prate... [more]
A0A1B6E9D0_9HEMI2.180e-531.71Uncharacterized protein (Fragment) n=1 Tax=Clastop... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101943contigH-elongata_contig101943:303..629 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101943.173.1mRNA_H-elongata_contig101943.173.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig101943 303..629 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig101943.173.1 ID=prot_H-elongata_contig101943.173.1|Name=mRNA_H-elongata_contig101943.173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MAIEVEKNVLPVGELSLEAMVKRWVTDSGFSRFMTPSADYMVNYREGGGV
VRIADGRVMPIEGTGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKM
MDDRGHKYV
back to top