prot_H-elongata_contig99016.17247.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig99016.17247.1
Unique Nameprot_H-elongata_contig99016.17247.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length43
Homology
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BLAST of mRNA_H-elongata_contig99016.17247.1 vs. uniprot
Match: D8LCW7_ECTSI (Zinc transporter zupT, Zinc transporter ZIP, metal ion transmembrane transporter activity n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCW7_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 7.470e-6
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0 
Query:    1 MGSAEDNTDNNAPMAFVLSLAAGMATCLGAAVVFNTRLV 39
            MG+AE NTDN AP+AFVL + AG++T +GAAVVFN +LV
Sbjct:    1 MGTAEQNTDN-APIAFVLVICAGLSTAIGAAVVFNQKLV 38
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99016.17247.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCW7_ECTSI7.470e-666.67Zinc transporter zupT, Zinc transporter ZIP, metal... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..42
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 15..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99016contigH-elongata_contig99016:628..756 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99016.17247.1mRNA_H-elongata_contig99016.17247.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig99016 628..1271 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig99016.17247.1 ID=prot_H-elongata_contig99016.17247.1|Name=mRNA_H-elongata_contig99016.17247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MGSAEDNTDNNAPMAFVLSLAAGMATCLGAAVVFNTRLVSEL*
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