mRNA_H-elongata_contig99016.17247.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99016.17247.1
Unique NamemRNA_H-elongata_contig99016.17247.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig99016.17247.1 vs. uniprot
Match: D8LCW7_ECTSI (Zinc transporter zupT, Zinc transporter ZIP, metal ion transmembrane transporter activity n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCW7_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 7.730e-5
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  183 MGSAEDNTDNNAPMAFVLSLAAGMATCLGAAVVFNTRLV 299
            MG+AE NTDN AP+AFVL + AG++T +GAAVVFN +LV
Sbjct:    1 MGTAEQNTDN-APIAFVLVICAGLSTAIGAAVVFNQKLV 38
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99016.17247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCW7_ECTSI7.730e-566.67Zinc transporter zupT, Zinc transporter ZIP, metal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99016contigH-elongata_contig99016:628..1271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size311
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99016.17247.1prot_H-elongata_contig99016.17247.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99016 628..756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931379.681276-CDS-H-elongata_contig99016:627..7561622931379.681276-CDS-H-elongata_contig99016:627..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99016 628..756 -
1691679812.35727-CDS-H-elongata_contig99016:627..7561691679812.35727-CDS-H-elongata_contig99016:627..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99016 628..756 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931379.6924717-UTR-H-elongata_contig99016:756..7601622931379.6924717-UTR-H-elongata_contig99016:756..760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99016 757..760 -
1691679812.3692596-UTR-H-elongata_contig99016:756..7601691679812.3692596-UTR-H-elongata_contig99016:756..760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99016 757..760 -
1622931379.704413-UTR-H-elongata_contig99016:1093..12711622931379.704413-UTR-H-elongata_contig99016:1093..1271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99016 1094..1271 -
1691679812.377126-UTR-H-elongata_contig99016:1093..12711691679812.377126-UTR-H-elongata_contig99016:1093..1271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99016 1094..1271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99016.17247.1

>prot_H-elongata_contig99016.17247.1 ID=prot_H-elongata_contig99016.17247.1|Name=mRNA_H-elongata_contig99016.17247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MGSAEDNTDNNAPMAFVLSLAAGMATCLGAAVVFNTRLVSEL*
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mRNA from alignment at H-elongata_contig99016:628..1271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99016.17247.1 ID=mRNA_H-elongata_contig99016.17247.1|Name=mRNA_H-elongata_contig99016.17247.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=644bp|location=Sequence derived from alignment at H-elongata_contig99016:628..1271- (Himanthalia elongata Himel1 dioecious)
CGCACCTATCCAAAAATAAGGATAATTTGATCATATAATTCCAGGAAGGA
TACATACAGTATACTACCAAGCGGTGAGGGCTCGAGGGATGCTTACAAAC
GATGCCCCCCGCCACAGTTGACTGGTGGTCCACGTTCAACCGAGTGGGCG
GGTGAAGCCTAAAAAACTCGCGATCTTAGTAAGAATCTTCCTACGACTTA
TGATGCAGTAGTAGTAGTATCTATAATGATGTCTGCTGTGTGCCCTTGCC
TTCCTTGGGGTGTCGTTTCTCTTCTTTTAGGCATCGGCTCGGCCGTCTCA
GTTACTATCTATCACCGTGCTTTGACTGACTTGACGTGTATCTTCCCTGT
ACTCTCGGGCAAGATTGGTTGTTGTCTATTTCGCCCAGTACCACGTTATA
CACGTTATACACGTTATACATCCTCTGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGTCGTACCAATCATTTTGAATTCTCATATCTC
TCCTATCTCAGGAAGATGGGGTCAGCCGAAGATAATACCGACAATAATGC
GCCGATGGCGTTCGTCCTCTCTTTGGCTGCTGGGATGGCAACGTGCTTGG
GAGCGGCCGTCGTCTTCAACACACGCCTAGTGAGTGAGCTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig99016:628..1271-

>mRNA_H-elongata_contig99016.17247.1 ID=mRNA_H-elongata_contig99016.17247.1|Name=mRNA_H-elongata_contig99016.17247.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig99016:628..1271- (Himanthalia elongata Himel1 dioecious)
ATGGGGTCAGCCGAAGATAATACCGACAATAATGCGCCGATGGCGTTCGT
CCTCTCTTTGGCTGCTGGGATGGCAACGTGCTTGGGAGCGGCCGTCGTCT
TCAACACACGCCTAGTGAGTGAGCTTTGAATGGGGTCAGCCGAAGATAAT
ACCGACAATAATGCGCCGATGGCGTTCGTCCTCTCTTTGGCTGCTGGGAT
GGCAACGTGCTTGGGAGCGGCCGTCGTCTTCAACACACGCCTAGTGAGTG
AGCTTTGA
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