prot_H-elongata_contig12262.1724.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12262.1724.1
Unique Nameprot_H-elongata_contig12262.1724.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length562
Homology
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BLAST of mRNA_H-elongata_contig12262.1724.1 vs. uniprot
Match: D8LEX2_ECTSI (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.290e-8
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0 
Query:  136 RDLPRALRSTSSPSEVVAAVNTLTLETF-EATEELVLEDIPGLFDAIFDLMDSLNPAVTQ 194
            + L RAL S  S +EV  AVNTLTLET+  A EELVL+ +PGL DAIFDLMD LNPA+ Q
Sbjct:  136 QQLARALGS-GSATEVCEAVNTLTLETYGTAEEELVLDHVPGLLDAIFDLMDKLNPAIAQ 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12262.1724.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEX2_ECTSI1.290e-865.00ARID/BRIGHT DNA binding domain containing protein ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..65
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 8..520

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12262contigH-elongata_contig12262:243..7087 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12262.1724.1mRNA_H-elongata_contig12262.1724.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12262 198..7529 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12262.1724.1 ID=prot_H-elongata_contig12262.1724.1|Name=mRNA_H-elongata_contig12262.1724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=562bp
MEVQQLQRQRQEEQQRKEDEQRLRKKEEEEHDRRRKLQEQQQHLVKQQQQ
QLQMEQQQLFRHQQQRQQAQHHMILKQQQHQQPPQQHHRAQAPPYRHGAF
LRSPADGHKAGTAFQHGNSRARSVGPGSVSASIPRRDLPRALRSTSSPSE
VVAAVNTLTLETFEATEELVLEDIPGLFDAIFDLMDSLNPAVTQVITLAQ
TLRSQIPKGAGSTPALLDASFKWAERPGGLFGGCSAGLPPSGRGELLLLL
LNALRNASFVPSNELVIGRSARAIQHFVSLCSATRPEPAVFAATLDLFGR
VTKHVDIWGRRDAETDYEGCKWAEDSLSYLAPAHVRMTTRSSSAEGGGGG
ITSPSVLEYVSNVVLLSPTLVSMVDDEDRPRVLSALAILSKLAQVGSNKE
AFNRVPGCFLGRLVELLTIPKLGCDVLATKAGVSSQEWLEYNCRVMHPVD
AGTDDEVRDSALEVMSLLAGLSDSLRSRLGAVPGCARALTNVVIANTKGI
RIDPQARRMAALTLTSLGAAESNHPRMRSLYSDLLVAAARDPQVAELLFH
GLKAVFPTLSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold