mRNA_H-elongata_contig9888.17233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9888.17233.1
Unique NamemRNA_H-elongata_contig9888.17233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: D8LRB7_ECTSI (Similar to calmodulin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB7_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.120e-28
Identity = 63/129 (48.84%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 DVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNRLTYKVRAA-----IRAIDRKNDGNLDIKGLKRLLVVTGSGLTDRELGEIFGAVDKGGSGRVNLQEFIDYMMAA 375
            DV+ DG VTK EL    WSLGQ+P EEE D +FREYD +  G LDF EFR L+T RLTYK   A                         +V TG GLT++EL EIFG  D  GSG+V++ EF+DYMM A
Sbjct:   75 DVNGDGSVTKSELKDALWSLGQNPTEEETDHIFREYDADKTGTLDFNEFRLLMTARLTYKNTRAEFXXXXXXXXXXXXXXXXXXXXXXXMVATGFGLTNQELKEIFGFFDSDGSGKVDMAEFLDYMMDA 203          
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: A0A6H5JR81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR81_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.510e-26
Identity = 61/132 (46.21%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    4 DVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNRLTYK--------VRAAIRAIDRKNDGNLDIKGLKRLLVVTGSGLTDRELGEIFGAVDKGGSGRVNLQEFIDYMMAA 375
            DV+ DG VTK EL    WSLGQ+P EEE D +FREYD +  G LDF EF+ L+T RLTYK                                 V +G GLT+REL EIFG  D+ GSG+V++ EF+DYMM A
Sbjct:   69 DVNGDGSVTKSELKDALWSLGQNPTEEETDHIFREYDADKTGTLDFNEFKLLMTARLTYKGDQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASGFGLTNRELKEIFGFFDRDGSGKVDMAEFLDYMMDA 200          
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: A0A0B7KDY7_BIOOC (Uncharacterized protein n=2 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A0B7KDY7_BIOOC)

HSP 1 Score: 84.0 bits (206), Expect = 2.340e-16
Identity = 42/127 (33.07%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 FDVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNR-----LTYKVRAAIRAIDRKNDGNLDIKGLKRLLVVTGSGLTDRELGEIFGAVDKGGSGRVNLQEFIDYM 366
            FD D+DG +T  EL +V  +LGQ+P E E+ A+  E D+++NGAL+F +F RL++++     L  ++      +DR  DG +  + L+  + V  +G+++ +L E+  A D+   G ++ +EF+  M
Sbjct:  475 FDQDKDGQITAAELSEVMRALGQNPTESELQAIIDEADLDNNGALEFSDFVRLMSDKVKPISLDEELWQVFVMLDRNGDGRVSKEELREAMAVLANGVSEADLNEMLQAADEDDDGHISYEEFVKVM 601          
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: A0A3M7NPM1_9EURO (Uncharacterized protein (Fragment) n=4 Tax=unclassified Chaetothyriales TaxID=316340 RepID=A0A3M7NPM1_9EURO)

HSP 1 Score: 79.7 bits (195), Expect = 3.210e-16
Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = 1
Query:    1 FDVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNRLT-----YKVRAAIRAIDRKNDGNLDIKGLKRLLVVTGSGLTDRELGEIFGAVDKGGSGRVNLQEFIDYM 366
            FD D  G +T  EL  V  SLGQ+P E E+  +  E DV+ +GA+DF+EF ++++  L       + RAA    D+   G +    L++++   G  LTD E+ E+    DK   G ++ +EF+  +
Sbjct:   41 FDKDNSGTITASELGDVMRSLGQNPSETELRDMINEVDVDQSGAIDFDEFLKMMSTTLKPIDVDQETRAAFAVFDKDGSGTISADELRQVMKSLGEDLTDAEIDEMIREADKDRDGTIDYEEFVQLL 167          
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: A0A0D1WEH7_9EURO (Uncharacterized protein n=1 Tax=Exophiala sideris TaxID=1016849 RepID=A0A0D1WEH7_9EURO)

HSP 1 Score: 76.3 bits (186), Expect = 7.810e-15
Identity = 39/127 (30.71%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    1 FDVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNRL-----TYKVRAAIRAIDRKNDGNLDIKGLKRLLVVTGSGLTDRELGEIFGAVDKGGSGRVNLQEFIDYM 366
            FD D  G +T  EL  +  SLGQ P + E+  +  E DV+++GA+DF+EF ++++  +       + RAA    D+   G +    L++++   G  LTD E+ E+    DK  +G ++ +EF+  +
Sbjct:   46 FDKDESGTITAQELGDIMRSLGQTPTDSELQDMINEVDVDNSGAIDFDEFLKMMSTTVRAQDFAQETRAAFDVFDKDGSGTISADELRQVMKSLGENLTDAEIEEMIREADKDRNGTIDYEEFVQLL 172          
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: A0A7I8VVI0_9ANNE (DgyrCDS8812 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VVI0_9ANNE)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-10
Identity = 39/132 (29.55%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    1 FDVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNRLTY-------------KVRAAIRAIDRKNDGNLDIKGLKRLLVVTGSGLTDRELGEIFGAVDKGGSGRVNLQEFI 357
            FD D DG +   EL QVF  LG     E+I  + ++ D++ NG++DFEEF+R++  R                ++RAA +  D+  +G +D K L+  +   G  L++ +L  +  +      GR+  +EF+
Sbjct:  196 FDKDADGVINTQELLQVFKQLGMDTSTEQIQRMMKKVDLDGNGSIDFEEFKRMMRKRKGLAAITRQERRAEEEEMRAAFKVFDKDKNGYIDDKELRVTMQELGMKLSENDLVAMMASAGVKKGGRIYYEEFV 327          
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: A0A0D1YVM1_9PEZI (Uncharacterized protein n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D1YVM1_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 5.010e-10
Identity = 33/104 (31.73%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 FDVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNRLTY------KVRAAIRAIDRKNDGNLDIKGLKRLLVVTGSGLTDREL 294
            FD + DG +T  EL ++  SLGQ+P   E+  +  E D++++GA+DF+EF R++  +LT       ++  A +  D+   G +  + LK L++  G  L+  E+
Sbjct:   20 FDKNGDGQITAEELGEIMRSLGQNPTATELQDIIAELDIDNSGAVDFDEFIRMMGQKLTSGGAEDDELLQAFKVFDKDGSGTISAQELKELMISIGESLSKDEI 123          
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: W2S1I9_9EURO (Uncharacterized protein n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2S1I9_9EURO)

HSP 1 Score: 62.0 bits (149), Expect = 6.420e-10
Identity = 32/108 (29.63%), Postives = 57/108 (52.78%), Query Frame = 1
Query:   58 SLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNRL-----TYKVRAAIRAIDRKNDGNLDIKGLKRLLVVTGSGLTDRELGEIFGAVDKGGSGRVNLQEFIDYM 366
            SLGQ P + E+  +  E DV+ +GA+DF+EF ++++  +      ++ RAA    D+ N G +    L++++   G  LTDRE+ E+    D         +EF+  +
Sbjct:    3 SLGQKPTDSELQDMISEVDVDQSGAIDFDEFLKMMSTSVKQSDFAHETRAAFAVFDKDNSGTISADELRQVMKSLGEDLTDREIDEMIAEADXXXXXXXXYEEFVQLL 110          
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: M5GDT3_DACPD (EF-hand n=3 Tax=Dacrymycetaceae TaxID=5254 RepID=M5GDT3_DACPD)

HSP 1 Score: 61.6 bits (148), Expect = 2.360e-9
Identity = 38/127 (29.92%), Postives = 63/127 (49.61%), Query Frame = 1
Query:    1 FDVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNRLTYK-----VRAAIRAIDRKNDGNLDIKGLKRLLVVTGSGLTDRELGEIFGAVDKGGSGRVNLQEFIDYM 366
            FD D+DG V   EL     +LG    + E+  + R+ D + +GA+ +E+F R++T R+  +     +R A +  D    G + ++ L+R+    G  L D EL  +    D    G +N QEF+  M
Sbjct:   30 FDTDKDGAVDYHELKVAMRALGFDMKKAEVLKILRDNDSDASGAMRYEDFVRVMTERILARDPLDEIRRAFKLFDDDGTGKISLRNLRRVAKELGENLDDDELQAMIEEFDLDQDGEINEQEFLAIM 156          
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Match: UPI001E1DC81B (calmodulin-beta-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC81B)

HSP 1 Score: 62.4 bits (150), Expect = 4.120e-9
Identity = 35/122 (28.69%), Postives = 61/122 (50.00%), Query Frame = 1
Query:    1 FDVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEFRRLLTNRLTYKVRAAIRAI----DRKNDGNLDIKGLKRLLVVTGSGLTDRELGEIFGAVDKGGSGRVNLQEF 354
            FD ++DG +TK EL  V  +LGQ P   E+ A+    D++ +G +DF+EF ++ + +L+      +  +    D   DG +    L  +L   G  +T  E  ++    D    G+V+ +EF
Sbjct:  121 FDKNQDGMITKEELGAVLHALGQRPTVSEVQALIHSVDLDKSGTIDFDEFVKIFSTKLSIDPEKELHEVFCIFDENGDGFISSDELYSMLHKLGEHITKHEAQKMINEADLNRDGKVDYREF 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9888.17233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRB7_ECTSI5.120e-2848.84Similar to calmodulin 2 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR81_9PHAE1.510e-2646.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0B7KDY7_BIOOC2.340e-1633.07Uncharacterized protein n=2 Tax=Bionectria ochrole... [more]
A0A3M7NPM1_9EURO3.210e-1633.07Uncharacterized protein (Fragment) n=4 Tax=unclass... [more]
A0A0D1WEH7_9EURO7.810e-1530.71Uncharacterized protein n=1 Tax=Exophiala sideris ... [more]
A0A7I8VVI0_9ANNE1.040e-1029.55DgyrCDS8812 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A0D1YVM1_9PEZI5.010e-1031.73Uncharacterized protein n=1 Tax=Verruconis gallopa... [more]
W2S1I9_9EURO6.420e-1029.63Uncharacterized protein n=1 Tax=Cyphellophora euro... [more]
M5GDT3_DACPD2.360e-929.92EF-hand n=3 Tax=Dacrymycetaceae TaxID=5254 RepID=M... [more]
UPI001E1DC81B4.120e-928.69calmodulin-beta-like n=1 Tax=Mercenaria mercenaria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9888contigH-elongata_contig9888:2203..3124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue5.1e-23
Seed eggNOG ortholog2880.D8LRB7
Preferred nameMLC2
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
GOsGO:0000142,GO:0000910,GO:0000916,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005933,GO:0005935,GO:0005938,GO:0006996,GO:0007010,GO:0007049,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0016459,GO:0016460,GO:0017022,GO:0022402,GO:0030029,GO:0030036,GO:0030427,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0032153,GO:0032155,GO:0032506,GO:0032991,GO:0036213,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044837,GO:0045159,GO:0051301,GO:0061640,GO:0070938,GO:0071840,GO:0071944,GO:0099568,GO:0110085
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-06_003120.1
Exons2
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931378.5551727-CDS-H-elongata_contig9888:2202..23881622931378.5551727-CDS-H-elongata_contig9888:2202..2388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9888 2203..2388 -
1691679811.8542309-CDS-H-elongata_contig9888:2202..23881691679811.8542309-CDS-H-elongata_contig9888:2202..2388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9888 2203..2388 -
1622931378.56963-CDS-H-elongata_contig9888:2932..31241622931378.56963-CDS-H-elongata_contig9888:2932..3124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9888 2933..3124 -
1691679811.8683586-CDS-H-elongata_contig9888:2932..31241691679811.8683586-CDS-H-elongata_contig9888:2932..3124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9888 2933..3124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9888.17233.1prot_H-elongata_contig9888.17233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9888 2203..3124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9888.17233.1

>prot_H-elongata_contig9888.17233.1 ID=prot_H-elongata_contig9888.17233.1|Name=mRNA_H-elongata_contig9888.17233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
FDVDRDGFVTKCELCQVFWSLGQHPGEEEIDAVFREYDVNHNGALDFEEF
RRLLTNRLTYKVRAAIRAIDRKNDGNLDIKGLKRLLVVTGSGLTDRELGE
IFGAVDKGGSGRVNLQEFIDYMMAA*
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mRNA from alignment at H-elongata_contig9888:2203..3124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9888.17233.1 ID=mRNA_H-elongata_contig9888.17233.1|Name=mRNA_H-elongata_contig9888.17233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=922bp|location=Sequence derived from alignment at H-elongata_contig9888:2203..3124- (Himanthalia elongata Himel1 dioecious)
TTTGATGTAGATCGCGACGGCTTTGTGACGAAGTGCGAACTCTGCCAAGT TTTTTGGTCGCTAGGACAGCACCCGGGAGAGGAGGAGATCGACGCAGTTT TTCGCGAATACGACGTCAACCACAACGGGGCACTCGATTTCGAAGAATTC AGGCGGTTACTGACGAATCGACTGACATACAAAGTACGTGCGGTCATTAT AGCGTCTAACCGAAAGCCAGTCGGGGCTGTGCAGTTATACAACTTATAAT ATGCGAAGTAACTTATACATTTCTGACTTCTGCCGCGGAGGATATGGATA TAATCACGTTTTTTCAGATAACCCCACGCTCGTGATGCAGCTTGATGAAT ACCGTCGATCGATGAGTTCATTGCATACCTTTGACCTTGTGCACGATCAG TTCCAGCCTTTCTTGTTTCTGAACTGGGTCGTCATGTGCTGCGTTAAAGA GGGTACCATGCAGGCCTTCGCCACGGGGAGGGAAAACTGCCCGTTTTCTC TTTTTGTTTCGTAAATCATCCTTTGTAGTCTTCTTGTGTACGTTGTCAGC TCGTTTCATTCCCACCTTACAAGTGCACGCTTTTCTACGTAAAAATGCAT TGTTATTAGTGATGGGCTTATCTAGATCATGCATATATAACTGTACATAA TATTATTTACACAGCTTCACCCTCTATGCACTATTGCGCCCTGAACCGGC TATTGTTTCTAGAACACACGAGAGGAGTTTACTGAGGCGATTCGGGCGAT CGATCGCAAAAACGACGGCAACCTCGACATCAAAGGCCTGAAGAGACTCC TCGTTGTGACGGGATCGGGACTGACAGACCGAGAGCTGGGGGAAATCTTC GGCGCGGTTGACAAGGGCGGCAGCGGGAGAGTTAACCTGCAGGAATTCAT CGATTACATGATGGCCGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig9888:2203..3124-

>mRNA_H-elongata_contig9888.17233.1 ID=mRNA_H-elongata_contig9888.17233.1|Name=mRNA_H-elongata_contig9888.17233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig9888:2203..3124- (Himanthalia elongata Himel1 dioecious)
TTTGATGTAGATCGCGACGGCTTTGTGACGAAGTGCGAACTCTGCCAAGT
TTTTTGGTCGCTAGGACAGCACCCGGGAGAGGAGGAGATCGACGCAGTTT
TTCGCGAATACGACGTCAACCACAACGGGGCACTCGATTTCGAAGAATTC
AGGCGGTTACTGACGAATCGACTGACATACAAAGTACGTGCGTTTGATGT
AGATCGCGACGGCTTTGTGACGAAGTGCGAACTCTGCCAAGTTTTTTGGT
CGCTAGGACAGCACCCGGGAGAGGAGGAGATCGACGCAGTTTTTCGCGAA
TACGACGTCAACCACAACGGGGCACTCGATTTCGAAGAATTCAGGCGGTT
ACTGACGAATCGACTGACATACAAAGTACGTGCGGCGATTCGGGCGATCG
ATCGCAAAAACGACGGCAACCTCGACATCAAAGGCCTGAAGAGACTCCTC
GTTGTGACGGGATCGGGACTGACAGACCGAGAGCTGGGGGAAATCTTCGG
CGCGGTTGACAAGGGCGGCAGCGGGAGAGTTAACCTGCAGGAATTCATCG
ATTACATGATGGCCGCGTGAGCGATTCGGGCGATCGATCGCAAAAACGAC
GGCAACCTCGACATCAAAGGCCTGAAGAGACTCCTCGTTGTGACGGGATC
GGGACTGACAGACCGAGAGCTGGGGGAAATCTTCGGCGCGGTTGACAAGG
GCGGCAGCGGGAGAGTTAACCTGCAGGAATTCATCGATTACATGATGGCC
GCGTGA
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