prot_H-elongata_contig9864.17209.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9864.17209.1
Unique Nameprot_H-elongata_contig9864.17209.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
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BLAST of mRNA_H-elongata_contig9864.17209.1 vs. uniprot
Match: D7FXY8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.570e-25
Identity = 45/64 (70.31%), Postives = 58/64 (90.62%), Query Frame = 0 
Query:    5 VLEEQKISRARRKWQKQSEFLCNVKFQNNLPDPPLGSRFLEVPLNLGKYVKYSPTTMDTNYKWK 68
            VLE+QKI++ARRKWQKQ+EFLC +KF+N+LPDPPLG  FL+VPL+L  YVKY PTT++++YKWK
Sbjct:    5 VLEDQKINKARRKWQKQTEFLCTIKFRNSLPDPPLGPHFLDVPLDLQSYVKYKPTTLESDYKWK 68
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BLAST of mRNA_H-elongata_contig9864.17209.1 vs. uniprot
Match: A0A835YRH5_9STRA (Paf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.560e-23
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 0 
Query:    5 VLEEQKISRARRKWQKQSEFLCNVKFQNNLPDPPLGSRFLEVPLNLGKYVKYSPTTMDTNYKWK 68
            VLE+QKI  ARRKWQK SEFLC++KF+NNLPDPPLG  FL++PL++ K V+Y+PTT++T +KWK
Sbjct:   89 VLEQQKIQTARRKWQKDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWK 152
[Close]
BLAST of mRNA_H-elongata_contig9864.17209.1 vs. uniprot
Match: A0A7S3YBK4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBK4_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 3.710e-18
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 0 
Query:    5 VLEEQKISRARRKWQKQSEFLCNVKFQNNLPDPPLGSRFLEVPLNLGKYVKYSPTTMDTNYKW 67
            VLEEQKI +AR+KWQK +EFLC +KF+N LP+P LG   L++P  + +  +Y P ++D NYKW
Sbjct:   78 VLEEQKIQKARKKWQKNTEFLCTLKFRNTLPEPHLGPNLLDIPFPIDELTEYRPNSLDVNYKW 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9864.17209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXY8_ECTSI7.570e-2570.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRH5_9STRA5.560e-2367.19Paf1-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3YBK4_HETAK3.710e-1853.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007133RNA polymerase II associated factor Paf1PFAMPF03985Paf1coord: 23..68
e-value: 1.2E-11
score: 44.3
IPR007133RNA polymerase II associated factor Paf1PANTHERPTHR23188FAMILY NOT NAMEDcoord: 12..69
NoneNo IPR availablePANTHERPTHR23188:SF12PAF1 HOMOLOG, PAF1/RNA POLYMERASE II COMPLEX COMPONENTcoord: 12..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9864contigH-elongata_contig9864:8928..9140 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9864.17209.1mRNA_H-elongata_contig9864.17209.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9864 8928..9140 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9864.17209.1 ID=prot_H-elongata_contig9864.17209.1|Name=mRNA_H-elongata_contig9864.17209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
HLPQVLEEQKISRARRKWQKQSEFLCNVKFQNNLPDPPLGSRFLEVPLNL
GKYVKYSPTTMDTNYKWKARE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007133RNA_pol_II-assoc_Paf1