mRNA_H-elongata_contig9864.17209.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9864.17209.1
Unique NamemRNA_H-elongata_contig9864.17209.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig9864.17209.1 vs. uniprot
Match: D7FXY8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.570e-25
Identity = 45/64 (70.31%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   13 VLEEQKISRARRKWQKQSEFLCNVKFQNNLPDPPLGSRFLEVPLNLGKYVKYSPTTMDTNYKWK 204
            VLE+QKI++ARRKWQKQ+EFLC +KF+N+LPDPPLG  FL+VPL+L  YVKY PTT++++YKWK
Sbjct:    5 VLEDQKINKARRKWQKQTEFLCTIKFRNSLPDPPLGPHFLDVPLDLQSYVKYKPTTLESDYKWK 68
[Close]
BLAST of mRNA_H-elongata_contig9864.17209.1 vs. uniprot
Match: A0A835YRH5_9STRA (Paf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.560e-23
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:   13 VLEEQKISRARRKWQKQSEFLCNVKFQNNLPDPPLGSRFLEVPLNLGKYVKYSPTTMDTNYKWK 204
            VLE+QKI  ARRKWQK SEFLC++KF+NNLPDPPLG  FL++PL++ K V+Y+PTT++T +KWK
Sbjct:   89 VLEQQKIQTARRKWQKDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWK 152
[Close]
BLAST of mRNA_H-elongata_contig9864.17209.1 vs. uniprot
Match: A0A7S3YBK4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBK4_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 3.710e-18
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   13 VLEEQKISRARRKWQKQSEFLCNVKFQNNLPDPPLGSRFLEVPLNLGKYVKYSPTTMDTNYKW 201
            VLEEQKI +AR+KWQK +EFLC +KF+N LP+P LG   L++P  + +  +Y P ++D NYKW
Sbjct:   78 VLEEQKIQKARKKWQKNTEFLCTLKFRNTLPEPHLGPNLLDIPFPIDELTEYRPNSLDVNYKW 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9864.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXY8_ECTSI7.570e-2570.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRH5_9STRA5.560e-2367.19Paf1-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3YBK4_HETAK3.710e-1853.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9864contigH-elongata_contig9864:8928..9140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue4.6e-21
Seed eggNOG ortholog2880.D7FXY8
Preferred namePAF1
KEGG rclassRC00080,RC00216,RC00242,RC00255
KEGG koko:K00294,ko:K11673,ko:K15174
KEGG ReactionR00245,R00707,R00708,R04444,R04445,R05051
KEGG Pathwayko00250,ko00330,ko01100,ko04011,map00250,map00330,map01100,map04011
GOsGO:0000018,GO:0000082,GO:0000083,GO:0000122,GO:0000183,GO:0000278,GO:0000414,GO:0000416,GO:0000428,GO:0000785,GO:0000981,GO:0000983,GO:0000988,GO:0000989,GO:0000993,GO:0001015,GO:0001076,GO:0001098,GO:0001099,GO:0001704,GO:0001706,GO:0001711,GO:0001932,GO:0001934,GO:0002237,GO:0002682,GO:0002683,GO:0003674,GO:0003682,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006323,GO:0006325,GO:0006333,GO:0006342,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006360,GO:0006362,GO:0006364,GO:0006366,GO:0006368,GO:0006378,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007369,GO:0007492,GO:0007507,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009302,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010033,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016584,GO:0016591,GO:0016593,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0022402,GO:0022607,GO:0022613,GO:0030054,GO:0030154,GO:0030880,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031399,GO:0031401,GO:0031440,GO:0031442,GO:0031497,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033182,GO:0033365,GO:0033523,GO:0033554,GO:0033993,GO:0034243,GO:0034470,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034728,GO:0035327,GO:0035987,GO:0036211,GO:0040029,GO:0042221,GO:0042254,GO:0042325,GO:0042327,GO:0043144,GO:0043170,GO:0043175,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043628,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0044877,GO:0045165,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045787,GO:0045814,GO:0045892,GO:0045893,GO:0045910,GO:0045934,GO:0045935,GO:0045937,GO:0045943,GO:0045944,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048598,GO:0048646,GO:0048731,GO:0048831,GO:0048856,GO:0048869,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051569,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0060795,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0070727,GO:0070887,GO:0070911,GO:0071103,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0071824,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090262,GO:0090304,GO:0097659,GO:0098727,GO:0098781,GO:0099122,GO:0140110,GO:1901360,GO:1901362,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1902806,GO:1902808,GO:1903047,GO:1903311,GO:1903313,GO:1903320,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1905269,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2000819,GO:2001020,GO:2001141,GO:2001163,GO:2001165,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001252,GO:2001253,GO:2001255
EggNOG free text desc.transcription elongation from RNA polymerase II promoter
EggNOG OGsKOG2478@1,KOG2478@2759
EC1.2.1.88
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931376.5925443-CDS-H-elongata_contig9864:8927..91401622931376.5925443-CDS-H-elongata_contig9864:8927..9140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9864 8928..9140 +
1691679811.0898883-CDS-H-elongata_contig9864:8927..91401691679811.0898883-CDS-H-elongata_contig9864:8927..9140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9864 8928..9140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9864.17209.1prot_H-elongata_contig9864.17209.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9864 8928..9140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9864.17209.1

>prot_H-elongata_contig9864.17209.1 ID=prot_H-elongata_contig9864.17209.1|Name=mRNA_H-elongata_contig9864.17209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
HLPQVLEEQKISRARRKWQKQSEFLCNVKFQNNLPDPPLGSRFLEVPLNL
GKYVKYSPTTMDTNYKWKARE
back to top

mRNA from alignment at H-elongata_contig9864:8928..9140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9864.17209.1 ID=mRNA_H-elongata_contig9864.17209.1|Name=mRNA_H-elongata_contig9864.17209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig9864:8928..9140+ (Himanthalia elongata Himel1 dioecious)
CACTTGCCACAGGTTCTAGAAGAACAGAAAATTAGCAGGGCCCGGAGGAA
ATGGCAGAAGCAGTCGGAGTTCCTGTGTAATGTAAAGTTCCAGAACAACC
TGCCCGATCCGCCGCTTGGTTCTCGCTTCCTGGAGGTGCCTTTGAACCTG
GGCAAGTACGTCAAGTACAGCCCGACTACGATGGACACGAACTACAAGTG
GAAGGCGAGAGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig9864:8928..9140+

>mRNA_H-elongata_contig9864.17209.1 ID=mRNA_H-elongata_contig9864.17209.1|Name=mRNA_H-elongata_contig9864.17209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig9864:8928..9140+ (Himanthalia elongata Himel1 dioecious)
CACTTGCCACAGGTTCTAGAAGAACAGAAAATTAGCAGGGCCCGGAGGAA
ATGGCAGAAGCAGTCGGAGTTCCTGTGTAATGTAAAGTTCCAGAACAACC
TGCCCGATCCGCCGCTTGGTTCTCGCTTCCTGGAGGTGCCTTTGAACCTG
GGCAAGTACGTCAAGTACAGCCCGACTACGATGGACACGAACTACAAGTG
GAAGGCGAGAGAGCACTTGCCACAGGTTCTAGAAGAACAGAAAATTAGCA
GGGCCCGGAGGAAATGGCAGAAGCAGTCGGAGTTCCTGTGTAATGTAAAG
TTCCAGAACAACCTGCCCGATCCGCCGCTTGGTTCTCGCTTCCTGGAGGT
GCCTTTGAACCTGGGCAAGTACGTCAAGTACAGCCCGACTACGATGGACA
CGAACTACAAGTGGAAGGCGAGAGAG
back to top