mRNA_H-elongata_contig9856.17202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9856.17202.1
Unique NamemRNA_H-elongata_contig9856.17202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9856.17202.1 vs. uniprot
Match: A0A6H5LIG4_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIG4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.020e-25
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:  124 KKQEVRRMSDAQRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTREELRCIGNWRGDAKLANHGDSLLKTIKEFLEENKVTLKGEFPMADQ 429
            K++ ++RMSD  R   K  L+KWR+ R  +F   RYF++ PE E+LE+IHKVP T EEL  IG+WRG+ KLA HG+SLL  IK ++++N +TL+G+FP  DQ
Sbjct:   83 KRETLKRMSDEHRARFKDALIKWRDERAEQFSL-RYFYIFPETELLEVIHKVPITSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ 183
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BLAST of mRNA_H-elongata_contig9856.17202.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 9.870e-23
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  136 VRRMSDAQRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTREELRCIGNWRGDAKLANHGDSLLKTIKEFLEENKVTLKGEFPMADQ 429
            ++RMSD  R   K  L+KWR+ R  +F   RYF++ PE E+LE+IHKVP T EEL  IG+WRG+ KLA HG+SLL  IK ++++N +TL+G+FP  DQ
Sbjct: 1293 LKRMSDEHRARFKDALIKWRDERAEQFSL-RYFYIFPETELLEVIHKVPVTSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ 1389
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9856.17202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIG4_9PHAE6.020e-2551.96HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR28_ECTSI9.870e-2353.06DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9856contigH-elongata_contig9856:692..4215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue4.2e-22
Seed eggNOG ortholog2880.D7FR28
KEGG koko:K03654,ko:K10901
KEGG Pathwayko03018,ko03440,ko03460,map03018,map03440,map03460
KEGG ModuleM00295,M00414
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHRDC-like
Ec32 orthologEc-13_001000.1
Exons6
Model size1073
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9856.17202.1prot_H-elongata_contig9856.17202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9856 788..3871 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931376.1474838-UTR-H-elongata_contig9856:691..7871622931376.1474838-UTR-H-elongata_contig9856:691..787Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9856 692..787 +
1691679810.8818877-UTR-H-elongata_contig9856:691..7871691679810.8818877-UTR-H-elongata_contig9856:691..787Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9856 692..787 +
1622931376.2684891-UTR-H-elongata_contig9856:3871..42151622931376.2684891-UTR-H-elongata_contig9856:3871..4215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9856 3872..4215 +
1691679810.9623888-UTR-H-elongata_contig9856:3871..42151691679810.9623888-UTR-H-elongata_contig9856:3871..4215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9856 3872..4215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931376.1700413-CDS-H-elongata_contig9856:787..8311622931376.1700413-CDS-H-elongata_contig9856:787..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 788..831 +
1691679810.8964088-CDS-H-elongata_contig9856:787..8311691679810.8964088-CDS-H-elongata_contig9856:787..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 788..831 +
1622931376.1946743-CDS-H-elongata_contig9856:1398..15131622931376.1946743-CDS-H-elongata_contig9856:1398..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 1399..1513 +
1691679810.9050112-CDS-H-elongata_contig9856:1398..15131691679810.9050112-CDS-H-elongata_contig9856:1398..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 1399..1513 +
1622931376.2109525-CDS-H-elongata_contig9856:1782..18491622931376.2109525-CDS-H-elongata_contig9856:1782..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 1783..1849 +
1691679810.9134114-CDS-H-elongata_contig9856:1782..18491691679810.9134114-CDS-H-elongata_contig9856:1782..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 1783..1849 +
1622931376.2265682-CDS-H-elongata_contig9856:2320..24421622931376.2265682-CDS-H-elongata_contig9856:2320..2442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 2321..2442 +
1691679810.9342446-CDS-H-elongata_contig9856:2320..24421691679810.9342446-CDS-H-elongata_contig9856:2320..2442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 2321..2442 +
1622931376.2427225-CDS-H-elongata_contig9856:3159..32201622931376.2427225-CDS-H-elongata_contig9856:3159..3220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 3160..3220 +
1691679810.9459505-CDS-H-elongata_contig9856:3159..32201691679810.9459505-CDS-H-elongata_contig9856:3159..3220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 3160..3220 +
1622931376.2561092-CDS-H-elongata_contig9856:3647..38711622931376.2561092-CDS-H-elongata_contig9856:3647..3871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 3648..3871 +
1691679810.9542067-CDS-H-elongata_contig9856:3647..38711691679810.9542067-CDS-H-elongata_contig9856:3647..3871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9856 3648..3871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9856.17202.1

>prot_H-elongata_contig9856.17202.1 ID=prot_H-elongata_contig9856.17202.1|Name=mRNA_H-elongata_contig9856.17202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp
MSLPPSSPQKKQEVRRMSDAQRKALKKVLVKWRENRVNEFKYTRYFHVLP
EPEVLEIIHKVPTTREELRCIGNWRGDAKLANHGDSLLKTIKEFLEENKV
TLKGEFPMADQAELGKEVEFPAGSQEYEDGGRYSDDGNGSWGGGELEDAQ
GDRGLTLSYDDGSGGSCSKFFKASHSGNCDGAREGKSDGAGGDLTGDQVL
LVHDLLEMTL*
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mRNA from alignment at H-elongata_contig9856:692..4215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9856.17202.1 ID=mRNA_H-elongata_contig9856.17202.1|Name=mRNA_H-elongata_contig9856.17202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3524bp|location=Sequence derived from alignment at H-elongata_contig9856:692..4215+ (Himanthalia elongata Himel1 dioecious)
CAGAGCGAGGTGGAGGCCTACGACAGCGACGACGATGAAGATGGCGACTT
CGAAGCGACCGGCATATCAAGATCGAAGAAGTCGAAAACGTCGCTGATGT
CTCTTCCTCCCAGTTCCCCTCAGAAGAAGCAAGAAGTAAGGTGGGTGGCC
CCTCAGAAGAAGCAAGAAATAAGGTGGGTGGCGGTAACGTCGGTGTCGTA
CTGCTGAGGGGTCTAACTCTACGAGTAGTTATCTTACAGTACTCTTCTGT
ATGTTTTTTTGCTCTCCGTTTACTGTATTATACCATACTACACTGAACTA
TAGTGTATTATATTATACTATACTGTACTGTACTGTACTGTGTAATGGAT
CACCTCACCAAGCCTTTTTTATGGATATACTTATTTCGCGTGTATGTTTG
TGTATGTGTATGTGTGTGTGTGTATTTATTAAACTGCTCATAACCGCGCA
ATCCCACCCTGTCATGCTAGTCGTTCGAAACTACTCGCATTGGTCATTAT
GTGGGACCATGTGTGTGTGCATGTGTAATTATTAAATTGTACATAATAAG
CGCTCATTCCAGCTCTGGTATAATAATAATAGTGATAATAATAGTAATAA
TAATAATAGTAACAGTAATAATATTGTAAGAGCAACAACAAAAACCATAG
CCGTTTGGAAAATAATGTCTCCTCACGGGCCTCCGCGTTGTGCCTGTGAT
TCCGCAGGAGGATGAGCGACGCCCAGCGGAAGGCGCTAAAGAAGGTGTTG
GTCAAGTGGCGGGAGAACCGCGTGAACGAGTTTAAGTACACACGCTACTT
CCACGTCCTTCCTGAGCCCGAGGTGTGTCCCCACGGCAACCCAACCCCAA
TGTCGCCAGCATCCGCGTCGTGACCGCAAACGTACCGCTTGCCTAACTGC
GCGTTAACGACTCGCCCTCCGAACGGTGTAAAGTTCGTGAAAAAACTCTT
ATCACATTGCCTTGTATATCCATGTGGTATAGACACGGCTTAACCGGGAA
AATGTGGGCTGCTCTTCTCGTCGCTGGTTTCTTGCGTCTCAACTCTTTCG
CCCGCGCGATCGAATCGGCTGCGGGTACGGCATTTACCCAGGTTCTGGAG
ATCATCCACAAGGTCCCCACCACCAGAGAGGAATTGCGCTGCATCGGAAA
CTGGCGAGGCAAGAGCGGGGAAGAGGGAGTGGAGACTTGCTCGCTTGTCG
CGGCATTTTTTTCTCACTGCGCGCGTGTAAATACCGGCCTCGATACATTA
CGCGCCGGCTGGCGCCTTCTCGAGACTTCCACCTTTTTTCTTCGTGATCG
GCGGAGAATTAGCTACCTTGACGATCACAACACGCTTCGCGTTCGCGGAA
GCACTTTAGCCTGGTGTTTTCTTGTATGTTGAATAGGATATATTGTTGAA
TAGGATTGCGATTTCGGAGACCAGTTGCGTCCACAAAGTTTCGACCCCAT
GTCTCTTCTTTTGCAGAGGCGGGCGACCGCCAAGCTCCGACCCATGAACG
GAATCTTGGAAGAGATGTCATATCGTGCCATCAGGCGTTATGAGGAGTGA
TTTTATGAAGCGTTTTATTTTAATCTTCTCCGGCGCGCTCGCCTTACAAG
TTGCCTCGGCGATGATGAAACTCTTTCAGGTGACGCAAAGCTGGCAAATC
ACGGTGATTCCCTGCTGAAGACGATCAAAGAGTTCTTAGAAGAAAACAAG
GTCACGCTCAAGGGGGAGTTCCCGATGGCAGACCAGGCCGAGTTGGGAAA
GGTGTGGAGTCGAAGCTCTCGTCTGAATGTTGTACATACACAGATGGTAT
GCAGTAGCTTGCTCTTTAAAAATAATTTTGTACGTTCTGTCTCGAATTCT
CAGTGTTGATTCAGCTGTCTACACATGCGTGTATATTATATAATTGGTGT
GCTATCTCGTCGTCCGAGAAGTGTATAATAGTCCAATGATAACCACTTTT
TAATAGCAAGGAAGCCATTAGCGCAGAAATCGTTTCTTCGATTTTTGCCC
AAGATGTTTATTTTGTTTCTACACCCAACCTAAAAATGTGATAAAAGAGA
AAATTTCAAGTTAGTGAAGTTCAACCATTGTATGTTTTAACAAGGTAGAG
TGCTAAACTTGTATCGCAATTTTAAAAATCCTGTATGAGGCGTGAACCAA
CCGGGGAGAAATTAATGGTATTGCTAGATGCATAGTGGCAGCGGAGGCGG
GGGCGGCGACAGCGTGAGCGTTTCGCCCTTTTTATAAACATTTGTTATTA
ATAGTTGACGTTGTGCAGGGAGTACTAATCTTGCATCGCGCTAAAAACAA
AAATCGCATAGAATGCGTAAACAGGGGGCTCCACAAACACCGTACTTGGT
TCTTTTCGCGTCTTTTGCGATAGCGCCGTAGGAAATATGCATAGGAACAC
GACGCATCTCATTGCTCAGCCTTTTGTGCGCTACCCCATCCCTCCCTCCC
CTTCCCCTTGGGCCCCAGGAGGTGGAATTCCCTGCGGGCAGTCAAGAATA
CGAGGACGGCGGTAGATACAGCGATGATGGTGAACAGCGTGCCCTTTTCC
GCGCGATCGCGCCCGCGTTTTAGGCACAACATGTCCGTCTTTTACGGCCC
AAAAGTGAATTCCCCATGAACAGAGGATATGTTATTGGGCTTTATTGGTA
CCCGCCCCCCCCGGTGAAAAGAAGCAGCATACTATCTGCTTTCGCGTAGC
GGTGCAGTGGGGTGCGGTTAGGCTTCTTCTATGTGCATCGCTCAATATAA
ACGCCGCAAGTTTAATCAGGAAACCCCGATTGGGCCTGAAATATTTCAGT
TGATGCTTAGTGTGCGGAAGAGACGCAAAGTATACCAAATAATATTTCGT
GGAGTAGAAGCCTAAGACGTTGGCATGTTTCTAGTGTATGGGTGTATATG
GATACCTGCAGCCCGATCATATTCTACCCTACACGTCGCGCGCGCCCTCG
TGGCAGGTAATGGGTCTTGGGGTGGCGGTGAGCTTGAGGATGCACAAGGA
GATCGCGGGTTGACCCTGTCCTACGACGACGGAAGTGGGGGATCTTGCTC
GAAATTTTTCAAGGCATCGCATAGTGGCAATTGTGACGGAGCGAGAGAGG
GCAAGAGCGATGGTGCCGGAGGCGATTTAACCGGCGATCAAGTTCTCCTT
GTCCACGACTTGCTCGAGATGACCTTGTGAAATTGGACGATCGAATGACC
ATGGATCCCCTAGCATAGAATGCTGGAGTCTGTGTCTAGAGAAAAGGGAA
ACCCTGTGATCATTAGAGGGTATATTGCACGATCAATCCTTGAGTTTTTC
CCCTAGTGGGATTATTTTTTACGGTTTGTCGCGCCTGCCACTACCACATG
CAGCGGAGGGGGCTCGTAGCTCAAAGGTATTAATCGAAGATTCGCTTGCG
TGGAAGGCATTTAAGGTCTCGTCATATTTTTTGGGGGGGATAGACAAAGT
GGGTATATCCACCCTTTTTGTGAACAAAAGTGGGGCGTGGAAAAAATGCT
TCGCGGGGACCGCCCGTGAGCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig9856:692..4215+

>mRNA_H-elongata_contig9856.17202.1 ID=mRNA_H-elongata_contig9856.17202.1|Name=mRNA_H-elongata_contig9856.17202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at H-elongata_contig9856:692..4215+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCTTCCTCCCAGTTCCCCTCAGAAGAAGCAAGAAGTAAGATGTCT
CTTCCTCCCAGTTCCCCTCAGAAGAAGCAAGAAGTAAGGAGGATGAGCGA
CGCCCAGCGGAAGGCGCTAAAGAAGGTGTTGGTCAAGTGGCGGGAGAACC
GCGTGAACGAGTTTAAGTACACACGCTACTTCCACGTCCTTCCTGAGCCC
GAGGAGGATGAGCGACGCCCAGCGGAAGGCGCTAAAGAAGGTGTTGGTCA
AGTGGCGGGAGAACCGCGTGAACGAGTTTAAGTACACACGCTACTTCCAC
GTCCTTCCTGAGCCCGAGGTTCTGGAGATCATCCACAAGGTCCCCACCAC
CAGAGAGGAATTGCGCTGCATCGGAAACTGGCGAGGTTCTGGAGATCATC
CACAAGGTCCCCACCACCAGAGAGGAATTGCGCTGCATCGGAAACTGGCG
AGGTGACGCAAAGCTGGCAAATCACGGTGATTCCCTGCTGAAGACGATCA
AAGAGTTCTTAGAAGAAAACAAGGTCACGCTCAAGGGGGAGTTCCCGATG
GCAGACCAGGCCGAGTTGGGAAAGGTGACGCAAAGCTGGCAAATCACGGT
GATTCCCTGCTGAAGACGATCAAAGAGTTCTTAGAAGAAAACAAGGTCAC
GCTCAAGGGGGAGTTCCCGATGGCAGACCAGGCCGAGTTGGGAAAGGAGG
TGGAATTCCCTGCGGGCAGTCAAGAATACGAGGACGGCGGTAGATACAGC
GATGATGGAGGTGGAATTCCCTGCGGGCAGTCAAGAATACGAGGACGGCG
GTAGATACAGCGATGATGGTAATGGGTCTTGGGGTGGCGGTGAGCTTGAG
GATGCACAAGGAGATCGCGGGTTGACCCTGTCCTACGACGACGGAAGTGG
GGGATCTTGCTCGAAATTTTTCAAGGCATCGCATAGTGGCAATTGTGACG
GAGCGAGAGAGGGCAAGAGCGATGGTGCCGGAGGCGATTTAACCGGCGAT
CAAGTTCTCCTTGTCCACGACTTGCTCGAGATGACCTTGTGAGTAATGGG
TCTTGGGGTGGCGGTGAGCTTGAGGATGCACAAGGAGATCGCGGGTTGAC
CCTGTCCTACGACGACGGAAGTGGGGGATCTTGCTCGAAATTTTTCAAGG
CATCGCATAGTGGCAATTGTGACGGAGCGAGAGAGGGCAAGAGCGATGGT
GCCGGAGGCGATTTAACCGGCGATCAAGTTCTCCTTGTCCACGACTTGCT
CGAGATGACCTTGTGA
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