prot_H-elongata_contig9856.17202.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9856.17202.1
Unique Nameprot_H-elongata_contig9856.17202.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length211
Homology
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BLAST of mRNA_H-elongata_contig9856.17202.1 vs. uniprot
Match: A0A6H5LIG4_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIG4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.340e-26
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 0 
Query:   10 KKQEVRRMSDAQRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTREELRCIGNWRGDAKLANHGDSLLKTIKEFLEENKVTLKGEFPMADQ 111
            K++ ++RMSD  R   K  L+KWR+ R  +F   RYF++ PE E+LE+IHKVP T EEL  IG+WRG+ KLA HG+SLL  IK ++++N +TL+G+FP  DQ
Sbjct:   83 KRETLKRMSDEHRARFKDALIKWRDERAEQFSL-RYFYIFPETELLEVIHKVPITSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ 183
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BLAST of mRNA_H-elongata_contig9856.17202.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.750e-24
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 0 
Query:   11 KQEVRRMSDAQRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTREELRCIGNWRGDAKLANHGDSLLKTIKEFLEENKVTLKGEFPMADQ 111
            ++ ++RMSD  R   K  L+KWR+ R  +F   RYF++ PE E+LE+IHKVP T EEL  IG+WRG+ KLA HG+SLL  IK ++++N +TL+G+FP  DQ
Sbjct: 1290 RETLKRMSDEHRARFKDALIKWRDERAEQFSL-RYFYIFPETELLEVIHKVPVTSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ 1389
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9856.17202.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIG4_9PHAE1.340e-2651.96HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR28_ECTSI1.750e-2451.49DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002121HRDC domainPFAMPF00570HRDCcoord: 24..91
e-value: 2.0E-5
score: 24.5
IPR002121HRDC domainPROSITEPS50967HRDCcoord: 19..101
score: 14.249
NoneNo IPR availableGENE3D1.10.150.80coord: 12..100
e-value: 1.2E-10
score: 43.0
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 15..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9856contigH-elongata_contig9856:788..3871 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9856.17202.1mRNA_H-elongata_contig9856.17202.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9856 692..4215 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9856.17202.1 ID=prot_H-elongata_contig9856.17202.1|Name=mRNA_H-elongata_contig9856.17202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp
MSLPPSSPQKKQEVRRMSDAQRKALKKVLVKWRENRVNEFKYTRYFHVLP
EPEVLEIIHKVPTTREELRCIGNWRGDAKLANHGDSLLKTIKEFLEENKV
TLKGEFPMADQAELGKEVEFPAGSQEYEDGGRYSDDGNGSWGGGELEDAQ
GDRGLTLSYDDGSGGSCSKFFKASHSGNCDGAREGKSDGAGGDLTGDQVL
LVHDLLEMTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002121HRDC_dom
IPR010997HRDC-like_sf