mRNA_H-elongata_contig98390.17188.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98390.17188.1
Unique NamemRNA_H-elongata_contig98390.17188.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: D7FHG5_ECTSI (Ubiquitination factor E4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.430e-16
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   61 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWIR 216
            PVT P S Q++DR +ITRHLLSD QDP++RKPLTVEMLEPNDALR EIEEWIR
Sbjct:  763 PVTLPTSGQIMDRPAITRHLLSDAQDPYNRKPLTVEMLEPNDALRGEIEEWIR 815
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BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A6A5T2M7_9PLEO (U-box domain-containing protein n=1 Tax=Clathrospora elynae TaxID=706981 RepID=A0A6A5T2M7_9PLEO)

HSP 1 Score: 63.9 bits (154), Expect = 3.370e-10
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   22 PLLLFLFHSPSVTPVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEW 210
            PL+  L   P   P+   S Q++DR +I  HLLSDP DPF+R PL +E + PNDAL+EEI+ W
Sbjct: 1002 PLMATLMEDPVTLPI---SKQIVDRSTIQSHLLSDPHDPFNRTPLKIEDVIPNDALKEEIQNW 1061
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BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A7R8CQ12_LEPSM (UBE4A n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CQ12_LEPSM)

HSP 1 Score: 62.8 bits (151), Expect = 6.240e-10
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   61 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWIR 216
            PVT P S Q++DR +I RHLLSD  DPF+R PL+++ + PN+AL+EEI EW++
Sbjct:  231 PVTLPDSGQIVDRSTIARHLLSDQSDPFNRMPLSMDRILPNEALKEEIHEWMK 283
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BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A6B2KXF9_9EUKA (U-box domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXF9_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 6.260e-10
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   22 PLLLFLFHSPSVTPVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWI 213
            PLL  L   P   P    S   +DR +ITRHLLS PQDPF+R PLT+E L P+DAL++EI+ W+
Sbjct:  813 PLLQTLMTDPVKLPT---SKVTIDRVTITRHLLSTPQDPFNRAPLTIEQLIPDDALKQEIDAWL 873
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BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A6T6AM48_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6AM48_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 6.290e-10
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   61 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWI 213
            PVT P S QV+DR +ITRHLLSDP DPF+RK LT +ML PN+ LR EIE +I
Sbjct:  992 PVTLPTSGQVMDRANITRHLLSDPTDPFNRKLLTEDMLIPNEELRREIEAFI 1043
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BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A0K2VHY9_LEPSM (U-box domain-containing protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VHY9_LEPSM)

HSP 1 Score: 62.8 bits (151), Expect = 8.570e-10
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   61 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWIR 216
            PVT P S Q++DR +I RHLLSD  DPF+R PL+++ + PN+AL+EEI EW++
Sbjct:  899 PVTLPDSGQIVDRSTIARHLLSDQSDPFNRMPLSMDRILPNEALKEEIHEWMK 951
[Close]
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A1X7UGQ2_AMPQE (U-box domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGQ2_AMPQE)

HSP 1 Score: 62.8 bits (151), Expect = 8.580e-10
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   61 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEW 210
            PVT P S  V+DR  I RHLLSD  DPF+R PLTVEML+PND LR++I +W
Sbjct:  933 PVTLPTSGNVVDRTVIMRHLLSDQNDPFNRHPLTVEMLQPNDELRQKIIDW 983
[Close]
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A485KK44_9STRA (Aste57867_8365 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK44_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.580e-10
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   61 PVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWI 213
            PVT PS  V+DR +IT+HL++DP DPF+R PL ++ L  NDAL+ +IE W+
Sbjct:  964 PVTLPSGYVVDRSTITQHLMNDPSDPFTRAPLAIDQLVSNDALKAQIEAWV 1014
[Close]
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A6S7GG89_PARCT (Ubiquitin conjugation factor E4 A n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GG89_PARCT)

HSP 1 Score: 62.8 bits (151), Expect = 8.600e-10
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   61 PVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWI 213
            PV  PS  ++D+  I RHLLSDP DPFSR PLTV+MLEP   L+E I++W+
Sbjct: 1025 PVKLPSGHIVDKPVIMRHLLSDPTDPFSRAPLTVDMLEPVPELKERIQQWL 1075
[Close]
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A8H7NDU4_BIOOC (U-box domain-containing protein n=1 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A8H7NDU4_BIOOC)

HSP 1 Score: 62.4 bits (150), Expect = 1.170e-9
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   61 PVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEW 210
            PV  PS  ++DR +I +HLLSDP+DPF+R+P+TV+ + P D LRE+IE+W
Sbjct:  868 PVLLPSKHIVDRSTIAQHLLSDPKDPFTRQPMTVDDVIPQDELREKIEKW 917
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG5_ECTSI1.430e-1679.25Ubiquitination factor E4 n=1 Tax=Ectocarpus silicu... [more]
A0A6A5T2M7_9PLEO3.370e-1050.79U-box domain-containing protein n=1 Tax=Clathrospo... [more]
A0A7R8CQ12_LEPSM6.240e-1056.60UBE4A n=1 Tax=Lepeophtheirus salmonis TaxID=72036 ... [more]
A0A6B2KXF9_9EUKA6.260e-1053.13U-box domain-containing protein n=1 Tax=Arcella in... [more]
A0A6T6AM48_9RHOD6.290e-1067.31Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A0K2VHY9_LEPSM8.570e-1056.60U-box domain-containing protein n=3 Tax=Lepeophthe... [more]
A0A1X7UGQ2_AMPQE8.580e-1064.71U-box domain-containing protein n=1 Tax=Amphimedon... [more]
A0A485KK44_9STRA8.580e-1054.90Aste57867_8365 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6S7GG89_PARCT8.600e-1058.82Ubiquitin conjugation factor E4 A n=2 Tax=Paramuri... [more]
A0A8H7NDU4_BIOOC1.170e-956.00U-box domain-containing protein n=1 Tax=Bionectria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98390contigH-elongata_contig98390:99..314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue7.2e-14
Seed eggNOG ortholog2880.D7FHG5
Preferred nameUBE4A
KEGG koko:K10596,ko:K10597
KEGG Pathwayko04120,ko04141,map04120,map04141
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0030433,GO:0032446,GO:0032991,GO:0033554,GO:0034450,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902494,GO:1990234
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGsCOG5113@1,KOG2042@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categorysignal peptide
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931374.8676915-CDS-H-elongata_contig98390:98..3141622931374.8676915-CDS-H-elongata_contig98390:98..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98390 99..314 +
1691679810.3391924-CDS-H-elongata_contig98390:98..3141691679810.3391924-CDS-H-elongata_contig98390:98..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98390 99..314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98390.17188.1prot_H-elongata_contig98390.17188.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98390 99..314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98390.17188.1

>prot_H-elongata_contig98390.17188.1 ID=prot_H-elongata_contig98390.17188.1|Name=mRNA_H-elongata_contig98390.17188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
LSNQKLLPLLLFLFHSPSVTPVTPPSPQVLDRQSITRHLLSDPQDPFSRK
PLTVEMLEPNDALREEIEEWIR
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mRNA from alignment at H-elongata_contig98390:99..314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98390.17188.1 ID=mRNA_H-elongata_contig98390.17188.1|Name=mRNA_H-elongata_contig98390.17188.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig98390:99..314+ (Himanthalia elongata Himel1 dioecious)
TTATCAAATCAGAAATTGCTACCGTTATTGTTGTTTTTATTCCATTCACC
TTCGGTCACCCCGGTCACCCCCCCCTCCCCCCAGGTGCTGGACAGGCAGT
CCATCACGCGCCACCTGCTCTCTGACCCCCAGGATCCCTTCAGCCGCAAG
CCTTTGACAGTGGAGATGCTCGAACCGAATGACGCATTGCGGGAGGAGAT
CGAGGAATGGATCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig98390:99..314+

>mRNA_H-elongata_contig98390.17188.1 ID=mRNA_H-elongata_contig98390.17188.1|Name=mRNA_H-elongata_contig98390.17188.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig98390:99..314+ (Himanthalia elongata Himel1 dioecious)
TTATCAAATCAGAAATTGCTACCGTTATTGTTGTTTTTATTCCATTCACC
TTCGGTCACCCCGGTCACCCCCCCCTCCCCCCAGGTGCTGGACAGGCAGT
CCATCACGCGCCACCTGCTCTCTGACCCCCAGGATCCCTTCAGCCGCAAG
CCTTTGACAGTGGAGATGCTCGAACCGAATGACGCATTGCGGGAGGAGAT
CGAGGAATGGATCAGGTTATCAAATCAGAAATTGCTACCGTTATTGTTGT
TTTTATTCCATTCACCTTCGGTCACCCCGGTCACCCCCCCCTCCCCCCAG
GTGCTGGACAGGCAGTCCATCACGCGCCACCTGCTCTCTGACCCCCAGGA
TCCCTTCAGCCGCAAGCCTTTGACAGTGGAGATGCTCGAACCGAATGACG
CATTGCGGGAGGAGATCGAGGAATGGATCAGG
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