prot_H-elongata_contig98390.17188.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig98390.17188.1
Unique Nameprot_H-elongata_contig98390.17188.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length72
Homology
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: D7FHG5_ECTSI (Ubiquitination factor E4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.430e-16
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0
Query:   21 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWIR 72
            PVT P S Q++DR +ITRHLLSD QDP++RKPLTVEMLEPNDALR EIEEWIR
Sbjct:  763 PVTLPTSGQIMDRPAITRHLLSDAQDPYNRKPLTVEMLEPNDALRGEIEEWIR 815          
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A6A5T2M7_9PLEO (U-box domain-containing protein n=1 Tax=Clathrospora elynae TaxID=706981 RepID=A0A6A5T2M7_9PLEO)

HSP 1 Score: 63.9 bits (154), Expect = 3.370e-10
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 0
Query:    8 PLLLFLFHSPSVTPVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEW 70
            PL+  L   P   P+   S Q++DR +I  HLLSDP DPF+R PL +E + PNDAL+EEI+ W
Sbjct: 1002 PLMATLMEDPVTLPI---SKQIVDRSTIQSHLLSDPHDPFNRTPLKIEDVIPNDALKEEIQNW 1061          
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A7R8CQ12_LEPSM (UBE4A n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CQ12_LEPSM)

HSP 1 Score: 62.8 bits (151), Expect = 6.240e-10
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 0
Query:   21 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWIR 72
            PVT P S Q++DR +I RHLLSD  DPF+R PL+++ + PN+AL+EEI EW++
Sbjct:  231 PVTLPDSGQIVDRSTIARHLLSDQSDPFNRMPLSMDRILPNEALKEEIHEWMK 283          
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A6B2KXF9_9EUKA (U-box domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXF9_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 6.260e-10
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    8 PLLLFLFHSPSVTPVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWI 71
            PLL  L   P   P    S   +DR +ITRHLLS PQDPF+R PLT+E L P+DAL++EI+ W+
Sbjct:  813 PLLQTLMTDPVKLPT---SKVTIDRVTITRHLLSTPQDPFNRAPLTIEQLIPDDALKQEIDAWL 873          
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A6T6AM48_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6AM48_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 6.290e-10
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 0
Query:   21 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWI 71
            PVT P S QV+DR +ITRHLLSDP DPF+RK LT +ML PN+ LR EIE +I
Sbjct:  992 PVTLPTSGQVMDRANITRHLLSDPTDPFNRKLLTEDMLIPNEELRREIEAFI 1043          
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A0K2VHY9_LEPSM (U-box domain-containing protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VHY9_LEPSM)

HSP 1 Score: 62.8 bits (151), Expect = 8.570e-10
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 0
Query:   21 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWIR 72
            PVT P S Q++DR +I RHLLSD  DPF+R PL+++ + PN+AL+EEI EW++
Sbjct:  899 PVTLPDSGQIVDRSTIARHLLSDQSDPFNRMPLSMDRILPNEALKEEIHEWMK 951          
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A1X7UGQ2_AMPQE (U-box domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGQ2_AMPQE)

HSP 1 Score: 62.8 bits (151), Expect = 8.580e-10
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0
Query:   21 PVT-PPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEW 70
            PVT P S  V+DR  I RHLLSD  DPF+R PLTVEML+PND LR++I +W
Sbjct:  933 PVTLPTSGNVVDRTVIMRHLLSDQNDPFNRHPLTVEMLQPNDELRQKIIDW 983          
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A485KK44_9STRA (Aste57867_8365 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK44_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.580e-10
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0
Query:   21 PVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWI 71
            PVT PS  V+DR +IT+HL++DP DPF+R PL ++ L  NDAL+ +IE W+
Sbjct:  964 PVTLPSGYVVDRSTITQHLMNDPSDPFTRAPLAIDQLVSNDALKAQIEAWV 1014          
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A6S7GG89_PARCT (Ubiquitin conjugation factor E4 A n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GG89_PARCT)

HSP 1 Score: 62.8 bits (151), Expect = 8.600e-10
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0
Query:   21 PVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEWI 71
            PV  PS  ++D+  I RHLLSDP DPFSR PLTV+MLEP   L+E I++W+
Sbjct: 1025 PVKLPSGHIVDKPVIMRHLLSDPTDPFSRAPLTVDMLEPVPELKERIQQWL 1075          
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Match: A0A8H7NDU4_BIOOC (U-box domain-containing protein n=1 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A8H7NDU4_BIOOC)

HSP 1 Score: 62.4 bits (150), Expect = 1.170e-9
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:   21 PVTPPSPQVLDRQSITRHLLSDPQDPFSRKPLTVEMLEPNDALREEIEEW 70
            PV  PS  ++DR +I +HLLSDP+DPF+R+P+TV+ + P D LRE+IE+W
Sbjct:  868 PVLLPSKHIVDRSTIAQHLLSDPKDPFTRQPMTVDDVIPQDELREKIEKW 917          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98390.17188.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG5_ECTSI1.430e-1679.25Ubiquitination factor E4 n=1 Tax=Ectocarpus silicu... [more]
A0A6A5T2M7_9PLEO3.370e-1050.79U-box domain-containing protein n=1 Tax=Clathrospo... [more]
A0A7R8CQ12_LEPSM6.240e-1056.60UBE4A n=1 Tax=Lepeophtheirus salmonis TaxID=72036 ... [more]
A0A6B2KXF9_9EUKA6.260e-1053.13U-box domain-containing protein n=1 Tax=Arcella in... [more]
A0A6T6AM48_9RHOD6.290e-1067.31Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A0K2VHY9_LEPSM8.570e-1056.60U-box domain-containing protein n=3 Tax=Lepeophthe... [more]
A0A1X7UGQ2_AMPQE8.580e-1064.71U-box domain-containing protein n=1 Tax=Amphimedon... [more]
A0A485KK44_9STRA8.580e-1054.90Aste57867_8365 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6S7GG89_PARCT8.600e-1058.82Ubiquitin conjugation factor E4 A n=2 Tax=Paramuri... [more]
A0A8H7NDU4_BIOOC1.170e-956.00U-box domain-containing protein n=1 Tax=Bionectria... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003613U box domainSMARTSM00504Ubox_2coord: 8..70
e-value: 1.7E-6
score: 37.6
IPR003613U box domainPFAMPF04564U-boxcoord: 20..71
e-value: 4.7E-16
score: 58.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 8..72
e-value: 7.2E-15
score: 56.8
NoneNo IPR availablePANTHERPTHR13931UBIQUITINATION FACTOR E4coord: 21..72
NoneNo IPR availablePANTHERPTHR13931:SF2UBIQUITIN CONJUGATION FACTOR E4 Acoord: 21..72
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..72
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.748
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 16..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98390contigH-elongata_contig98390:99..314 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98390.17188.1mRNA_H-elongata_contig98390.17188.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig98390 99..314 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig98390.17188.1 ID=prot_H-elongata_contig98390.17188.1|Name=mRNA_H-elongata_contig98390.17188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
LSNQKLLPLLLFLFHSPSVTPVTPPSPQVLDRQSITRHLLSDPQDPFSRK
PLTVEMLEPNDALREEIEEWIR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD