mRNA_H-elongata_contig122475.1718.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122475.1718.1
Unique NamemRNA_H-elongata_contig122475.1718.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122475.1718.1 vs. uniprot
Match: A0A2S7QSM9_9HELO (Tuftelin interacting 11 protein n=3 Tax=unclassified Rutstroemia TaxID=2684950 RepID=A0A2S7QSM9_9HELO)

HSP 1 Score: 50.4 bits (119), Expect = 7.490e-6
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 PDQFENASNSRRAGRFGPDQGGAGATDESGMNFAKRMMAKMDYKEGQGV 147
            P  F   SN R     G  +GG+GAT  +GM+FA RMMAKM YKEGQG+
Sbjct:  110 PSAFSTPSNGR-----GGKKGGSGATPVNGMSFAARMMAKMGYKEGQGL 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122475.1718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2S7QSM9_9HELO7.490e-655.10Tuftelin interacting 11 protein n=3 Tax=unclassifi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122475contigH-elongata_contig122475:1665..1814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.8955379-CDS-H-elongata_contig122475:1664..18141622929720.8955379-CDS-H-elongata_contig122475:1664..1814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122475 1665..1814 +
1691679132.212575-CDS-H-elongata_contig122475:1664..18141691679132.212575-CDS-H-elongata_contig122475:1664..1814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122475 1665..1814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122475.1718.1prot_H-elongata_contig122475.1718.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122475 1665..1814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122475.1718.1

>prot_H-elongata_contig122475.1718.1 ID=prot_H-elongata_contig122475.1718.1|Name=mRNA_H-elongata_contig122475.1718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
PDQFENASNSRRAGRFGPDQGGAGATDESGMNFAKRMMAKMDYKEGQGV*
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mRNA from alignment at H-elongata_contig122475:1665..1814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122475.1718.1 ID=mRNA_H-elongata_contig122475.1718.1|Name=mRNA_H-elongata_contig122475.1718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig122475:1665..1814+ (Himanthalia elongata Himel1 dioecious)
CCCGATCAGTTCGAAAACGCCTCCAACTCTCGACGTGCGGGAAGATTCGG
CCCAGATCAGGGAGGGGCTGGTGCGACAGACGAAAGCGGCATGAATTTTG
CCAAGCGCATGATGGCCAAGATGGATTACAAGGAGGGCCAAGGTGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig122475:1665..1814+

>mRNA_H-elongata_contig122475.1718.1 ID=mRNA_H-elongata_contig122475.1718.1|Name=mRNA_H-elongata_contig122475.1718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig122475:1665..1814+ (Himanthalia elongata Himel1 dioecious)
CCCGATCAGTTCGAAAACGCCTCCAACTCTCGACGTGCGGGAAGATTCGG
CCCAGATCAGGGAGGGGCTGGTGCGACAGACGAAAGCGGCATGAATTTTG
CCAAGCGCATGATGGCCAAGATGGATTACAAGGAGGGCCAAGGTGTGTAG
CCCGATCAGTTCGAAAACGCCTCCAACTCTCGACGTGCGGGAAGATTCGG
CCCAGATCAGGGAGGGGCTGGTGCGACAGACGAAAGCGGCATGAATTTTG
CCAAGCGCATGATGGCCAAGATGGATTACAAGGAGGGCCAAGGTGTGTAG
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