prot_H-elongata_contig9824.17175.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9824.17175.1
Unique Nameprot_H-elongata_contig9824.17175.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length243
Homology
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BLAST of mRNA_H-elongata_contig9824.17175.1 vs. uniprot
Match: A0A6H5JE47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE47_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.980e-9
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:   28 GRMVDEVSLRLAAVSKSLALLENVAILPSLNRVSDALRADLDQRTEERAKTAAASRIERTWRS 90
            G M+DEV+LRLA VS++L LLE+VAILP L R+S +++ ++++R E RAK   A+RIER WRS
Sbjct:  897 GGMIDEVTLRLATVSEALTLLEDVAILPRLRRMSGSVQVEVNRRAEMRAKADWANRIERVWRS 959
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9824.17175.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JE47_9PHAE1.980e-957.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..242
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9824contigH-elongata_contig9824:3788..5125 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9824.17175.1mRNA_H-elongata_contig9824.17175.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9824 3465..5389 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9824.17175.1 ID=prot_H-elongata_contig9824.17175.1|Name=mRNA_H-elongata_contig9824.17175.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
MTQAGSVAATAATPVPAARRVRMEQRAGRMVDEVSLRLAAVSKSLALLEN
VAILPSLNRVSDALRADLDQRTEERAKTAAASRIERTWRSFCHARSSRRY
TSRKTPRAAPSASCSSPSSGSGEAGGGGNRRSRSGDGSVGRQTWLRSSRA
EKEERGKRDLYFLEQEDTNNNSDGDSDDEWSPSGCAVKRKRCEPRSKLKR
KRRMRVGAAVSDVAATSSASESESAADENTPRSRPRRARINV*
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