prot_H-elongata_contig98081.17157.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig98081.17157.1
Unique Nameprot_H-elongata_contig98081.17157.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length115
Homology
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: D7FME5_ECTSI (5'-3' exoribonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME5_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 3.660e-71
Identity = 112/115 (97.39%), Postives = 115/115 (100.00%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKDMKDAKL 115
            MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR+RKDM++AKL
Sbjct:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMQEAKL 115          
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 207 bits (526), Expect = 9.530e-60
Identity = 98/109 (89.91%), Postives = 104/109 (95.41%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKD 109
            MGVPKFYRW+SERYPKINQIVSD++L+PEFDNLYLDMNGILH CTHPNDD LS QLSERD+ LG+FHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRS KD
Sbjct:    1 MGVPKFYRWLSERYPKINQIVSDTSLIPEFDNLYLDMNGILHGCTHPNDDSLSKQLSERDVFLGVFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSAKD 109          
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: A0A7S2UCD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD1_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.450e-55
Identity = 84/113 (74.34%), Postives = 100/113 (88.50%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKDMKDA 113
            MGVPKFYRWISERYPKINQ+++D+ LLPEFD+LYLDMNGI+H CTHPN   +S  LSERD++LGI HY+DRIVT IV+P+  +YMAIDGVAPRAK+NQQRSRRFRS KD+ +A
Sbjct:    1 MGVPKFYRWISERYPKINQVITDTALLPEFDHLYLDMNGIIHGCTHPNHLDVSDVLSERDMMLGIMHYLDRIVTQIVKPQVSVYMAIDGVAPRAKLNQQRSRRFRSAKDLAEA 113          
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: A0A7S1XZW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZW9_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.140e-54
Identity = 79/109 (72.48%), Postives = 98/109 (89.91%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKD 109
            MGVPKFYRW+SER+PKIN ++SD TLLPEFDN+YLDMNGILH CTHP+DD LS +  ER+++L +F Y+DR++T IV+PR+++YMA+DGVAPRAKMNQQRSRRFRS KD
Sbjct:    1 MGVPKFYRWLSERFPKINTVISDLTLLPEFDNMYLDMNGILHGCTHPSDDELSKERPEREVVLALFKYLDRLITGIVKPRKIVYMALDGVAPRAKMNQQRSRRFRSAKD 109          
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: A0A7S4DF97_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF97_HETAK)

HSP 1 Score: 175 bits (443), Expect = 1.310e-54
Identity = 82/113 (72.57%), Postives = 99/113 (87.61%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKDMKDA 113
            MGVPKFYRW+SERYP INQ++SD TLLPEFDNLYLDMNGILH C+HP D   ++ LS+RDI+L IF YIDRIVT IVRP+++L++A+DG APRAK+NQQRSRRFRS KD ++A
Sbjct:    1 MGVPKFYRWLSERYPLINQLISDETLLPEFDNLYLDMNGILHNCSHPGDG--ASHLSDRDIMLSIFSYIDRIVTQIVRPKKILFLAVDGCAPRAKLNQQRSRRFRSAKDAREA 111          
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: A0A448ZS96_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS96_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.880e-49
Identity = 85/113 (75.22%), Postives = 99/113 (87.61%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKDMKDA 113
            MGVPKFYRWISERY KIN+IVSDS LLPEFD+LYLDMNGI+H CTHP+   +S  +SERD++LGI HY+DRI+T IV+PR  +YMAIDGVAPRAK+NQQRSRRFRS KDM +A
Sbjct:    1 MGVPKFYRWISERYTKINEIVSDSALLPEFDHLYLDMNGIIHGCTHPSHMDISDVISERDMMLGIMHYLDRIITQIVKPRVSVYMAIDGVAPRAKLNQQRSRRFRSAKDMAEA 113          
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: A0A7S4EG33_9STRA (5'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG33_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.880e-49
Identity = 85/113 (75.22%), Postives = 99/113 (87.61%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKDMKDA 113
            MGVPKFYRWISERY KIN+IVSDS LLPEFD+LYLDMNGI+H CTHP+   +S  +SERD++LGI HY+DRI+T IV+PR  +YMAIDGVAPRAK+NQQRSRRFRS KDM +A
Sbjct:    1 MGVPKFYRWISERYTKINEIVSDSALLPEFDHLYLDMNGIIHGCTHPSHMDISDVISERDMMLGIMHYLDRIITQIVKPRVSVYMAIDGVAPRAKLNQQRSRRFRSAKDMAEA 113          
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: A0A1Z5JKV0_FISSO (5'-3' exoribonuclease 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKV0_FISSO)

HSP 1 Score: 176 bits (447), Expect = 5.340e-49
Identity = 83/113 (73.45%), Postives = 99/113 (87.61%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKDMKDA 113
            MGVPKFYRW+SERYPKINQI+SD+ LLPEFD+LYLDMNGI+H CTHP+   +S  LSERD++LGI HY+DRI+T IV+P+  +YMAIDGVAPRAK+NQQRSRRFRS KD  +A
Sbjct:    1 MGVPKFYRWLSERYPKINQIISDNALLPEFDHLYLDMNGIIHGCTHPSHMDISDVLSERDMMLGIMHYLDRIITQIVKPKVSVYMAIDGVAPRAKLNQQRSRRFRSAKDTAEA 113          
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA)

HSP 1 Score: 176 bits (447), Expect = 5.350e-49
Identity = 82/113 (72.57%), Postives = 100/113 (88.50%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKDMKDA 113
            MGVPKFYRWISERYPKINQ+++DS LLPEFD+LYLDMNGI+H CTHP+   +S  LSERD+++GI HY+DRI+T IV+P+  +YMAIDGVAPRAK+NQQRSRRFRS KD+ +A
Sbjct:    1 MGVPKFYRWISERYPKINQVITDSALLPEFDHLYLDMNGIIHGCTHPSHLDVSDVLSERDMMMGIMHYLDRIITQIVKPKVSVYMAIDGVAPRAKLNQQRSRRFRSAKDLAEA 113          
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.220e-48
Identity = 80/113 (70.80%), Postives = 99/113 (87.61%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSRKDMKDA 113
            MGVPKFYRW+SERYPKINQ++++  LLPEFD+LYLDMNGI+H CTHPN   +S  LSERD++LGI HY+DRI+T IV+P+  ++MAIDGVAPRAK+NQQRSRRFRS KD+ +A
Sbjct:    1 MGVPKFYRWLSERYPKINQVITNEALLPEFDHLYLDMNGIIHGCTHPNHLDVSDVLSERDMVLGIMHYLDRIITQIVKPKVSVFMAIDGVAPRAKLNQQRSRRFRSAKDLAEA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98081.17157.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME5_ECTSI3.660e-7197.395'-3' exoribonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4G8_9STRA9.530e-6089.91XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S2UCD1_9STRA1.450e-5574.34Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1XZW9_9STRA1.140e-5472.48Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4DF97_HETAK1.310e-5472.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A448ZS96_9STRA2.880e-4975.225'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EG33_9STRA2.880e-4975.225'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia a... [more]
A0A1Z5JKV0_FISSO5.340e-4973.455'-3' exoribonuclease 1 n=2 Tax=Fistulifera solari... [more]
A0A7S4RC29_9STRA5.350e-4972.575'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwell... [more]
A0A7S2PSP2_9STRA3.220e-4870.80Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.12390coord: 1..115
e-value: 2.6E-44
score: 153.7
IPR004859Putative 5-3 exonucleasePFAMPF03159XRN_Ncoord: 1..113
e-value: 1.2E-43
score: 149.3
IPR0270735'-3' exoribonucleasePANTHERPTHR123415'->3' EXORIBONUCLEASEcoord: 1..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98081contigH-elongata_contig98081:734..1627 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98081.17157.1mRNA_H-elongata_contig98081.17157.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig98081 734..1627 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig98081.17157.1 ID=prot_H-elongata_contig98081.17157.1|Name=mRNA_H-elongata_contig98081.17157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDD
GLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQR
SRRFRSRKDMKDAKL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004859Put_53exo
IPR0270735_3_exoribonuclease