mRNA_H-elongata_contig122452.1715.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122452.1715.1
Unique NamemRNA_H-elongata_contig122452.1715.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.450e-42
Identity = 98/156 (62.82%), Postives = 114/156 (73.08%), Query Frame = 1 
Query:    1 VRLAGDSHGKKAFQRYLARGPLAVLPLKGG-LASLVWSTTPEHAELLKAMTEQEFLAEVNDALTRPPAVHGAATSTASQSS---------PEEKVFGGVSSLAAPPMAAASALAEGFVKGAEDVAGALAGLSLGL-EGREGGGGGGFSTPPQAVEV 435
            V+LA +SHG+ AFQRYL+RGPLA+LPL GG LASLVWSTTPEHAE LK+M+  EF+ EVNDAL  PP +  + +S+A  +S          E  +FGGVSSLAA P A ASAL EG  KGAE +AGALAGLSLGL EG   GG GGF TPP+A EV
Sbjct:  289 VKLA-ESHGEVAFQRYLSRGPLAMLPLPGGKLASLVWSTTPEHAESLKSMSTTEFVKEVNDALRLPPTIGTSPSSSAEPASFSGTVPPFAGEHGLFGGVSSLAALPFATASALGEGVAKGAEGIAGALAGLSLGLQEGAGDGGRGGFCTPPEATEV 443
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BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: A0A6H5KUH3_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH3_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.260e-42
Identity = 98/156 (62.82%), Postives = 114/156 (73.08%), Query Frame = 1 
Query:    1 VRLAGDSHGKKAFQRYLARGPLAVLPLKGG-LASLVWSTTPEHAELLKAMTEQEFLAEVNDALTRPPAVHGAATSTASQSS---------PEEKVFGGVSSLAAPPMAAASALAEGFVKGAEDVAGALAGLSLGL-EGREGGGGGGFSTPPQAVEV 435
            V+LA +SHG+ AFQRYL+RGPLA+LPL GG LASLVWSTTP HAE LK+M+  EF+ EVNDAL  PP +  + +S+A  +S          +  +FG VSSLAA P A ASAL EGF K AE VAGALAGLSLGL EG  GGG GGF TPP+AVEV
Sbjct:  191 VKLA-ESHGEVAFQRYLSRGPLAMLPLPGGKLASLVWSTTPVHAESLKSMSTTEFVKEVNDALRLPPTIGTSPSSSAEPASFSGTVPPFAGDHGLFGRVSSLAALPFATASALGEGFAKSAEGVAGALAGLSLGLQEGAGGGGTGGFCTPPEAVEV 345
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BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: A0A2N6NRD3_BEABA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=6 Tax=Cordycipitaceae TaxID=474943 RepID=A0A2N6NRD3_BEABA)

HSP 1 Score: 74.3 bits (181), Expect = 1.180e-12
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   13 GDSHGKKAFQRYLARGPLAVLPLKGGLASLVWSTTPEHAELLKAMTEQEFLAEVNDALTRPP 198
            G +H K A+QR+L  GP+A+LP+ G  A+LVWSTTPE+A +LKA+  Q+FLA VN A   PP
Sbjct:  257 GGAHTKTAYQRFLPTGPVAMLPMPGRYATLVWSTTPENAAVLKALPAQDFLALVNAAFRLPP 318
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BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: G3J8Q8_CORMM (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=2 Tax=Cordyceps militaris TaxID=73501 RepID=G3J8Q8_CORMM)

HSP 1 Score: 73.6 bits (179), Expect = 2.190e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   13 GDSHGKKAFQRYLARGPLAVLPLKGGLASLVWSTTPEHAELLKAMTEQEFLAEVNDALTRPP 198
            G +H K A+QR+L  GP+A+LP+ G  A+LVWSTTPE+A +LK++  Q+FLA VN A   PP
Sbjct:  259 GGAHTKTAYQRFLPTGPVAMLPMPGKYATLVWSTTPENAAVLKSLAPQDFLALVNAAFRLPP 320
[Close]
BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: A0A6A6URX6_9PEZI (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6URX6_9PEZI)

HSP 1 Score: 72.8 bits (177), Expect = 4.040e-12
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 VRLAGDSHGKKAFQRYLARGPLAVLPLKGGLASLVWSTTPEHAELLKAMTEQEFLAEVN 177
            ++L  +   K A+QR+L+ GP+A+LPL G +ASLVWSTTPE AE+LKA++E++F A VN
Sbjct:  250 IQLESEPVRKIAYQRFLSTGPIAMLPLPGKMASLVWSTTPERAEVLKALSEEDFSAMVN 308
[Close]
BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: A0A084QRE3_STAC4 (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=3 Tax=Stachybotrys TaxID=74721 RepID=A0A084QRE3_STAC4)

HSP 1 Score: 72.8 bits (177), Expect = 4.060e-12
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   13 GDSHGKKAFQRYLARGPLAVLPLKGGLASLVWSTTPEHAELLKAMTEQEFLAEVNDA 183
            G SH K A+QR+L  GP+A+LPL G  A+LVWSTTPE+A LLK ++ Q+F+A VN A
Sbjct:  255 GGSHNKIAYQRFLPTGPVAMLPLPGKYATLVWSTTPENAALLKTLSPQDFVATVNAA 311
[Close]
BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: A0A835YJF8_9CHLO (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YJF8_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 4.060e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   34 AFQRYLARGPLAVLPLKGGLASLVWSTTPEHAELLKAMTEQEFLAEVNDALTRPPA 201
            AFQR+L  GPLA+LP++GGL+S+VWSTTPE A  L+A+  +EF A VN AL  PPA
Sbjct:  263 AFQRFLPTGPLALLPVRGGLSSIVWSTTPEAAAALEALGPREFAAAVNKALLDPPA 318
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BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: A0A0F4ZAG1_9PEZI (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Thielaviopsis punctulata TaxID=72032 RepID=A0A0F4ZAG1_9PEZI)

HSP 1 Score: 72.0 bits (175), Expect = 7.520e-12
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 VRLAGDSHG----KKAFQRYLARGPLAVLPLKGGLASLVWSTTPEHAELLKAMTEQEFLAEVN 177
            +RLAGD  G    K A+QR+L  GP+A+LPL G LA+LVWSTTPE A LLK +  ++F+A VN
Sbjct:  242 LRLAGDGWGGAARKIAYQRFLPTGPMALLPLPGALATLVWSTTPERAALLKTLAPRDFVALVN 304
[Close]
BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: A0A507BHH1_9PEZI (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Thyridium curvatum TaxID=1093900 RepID=A0A507BHH1_9PEZI)

HSP 1 Score: 71.2 bits (173), Expect = 1.540e-11
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 VRLAGDSHG----KKAFQRYLARGPLAVLPLKGGLASLVWSTTPEHAELLKAMTEQEFLAEVNDALTRPP 198
            ++LAGD  G    K A+QR+L  GP+A+LPL G L++LVWSTTPE+A +LK +   +F+A VN A   PP
Sbjct:  616 LQLAGDGWGGDQHKIAYQRFLPTGPVAMLPLPGNLSTLVWSTTPENAAILKRLAPADFVALVNAAFRLPP 685
[Close]
BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Match: A0A066X9K8_COLSU (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Colletotrichum sublineola TaxID=1173701 RepID=A0A066X9K8_COLSU)

HSP 1 Score: 70.1 bits (170), Expect = 3.540e-11
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   13 GDSHGKKAFQRYLARGPLAVLPLKGGLASLVWSTTPEHAELLKAMTEQEFLAEVNDALTRPP 198
            G  H K A+QR+L  GP+A+LPL G  ++LVWSTTPE+A LLK++  +EF+A VN A    P
Sbjct:  259 GAEHNKIAYQRFLPTGPVAMLPLPGNYSTLVWSTTPENAALLKSLPPKEFIAMVNAAFRLSP 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122452.1715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1J7_ECTSI2.450e-4262.82Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A0A6H5KUH3_9PHAE3.260e-4262.82FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A2N6NRD3_BEABA1.180e-1256.45Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
G3J8Q8_CORMM2.190e-1254.84Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A6A6URX6_9PEZI4.040e-1255.93Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A084QRE3_STAC44.060e-1259.65Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A835YJF8_9CHLO4.060e-1262.50Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A0F4ZAG1_9PEZI7.520e-1257.14Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A507BHH1_9PEZI1.540e-1151.43Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A066X9K8_COLSU3.540e-1153.23Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122452contigH-elongata_contig122452:325..1355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue7.4e-37
Seed eggNOG ortholog2880.D7G1J7
Preferred nameCOQ6
KEGG rclassRC02670
KEGG koko:K06126,ko:K21437
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size453
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122452.1715.1prot_H-elongata_contig122452.1715.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122452 325..1355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.6349206-CDS-H-elongata_contig122452:324..4651622929720.6349206-CDS-H-elongata_contig122452:324..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122452 325..465 +
1691679132.0744717-CDS-H-elongata_contig122452:324..4651691679132.0744717-CDS-H-elongata_contig122452:324..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122452 325..465 +
1622929720.6499505-CDS-H-elongata_contig122452:902..10131622929720.6499505-CDS-H-elongata_contig122452:902..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122452 903..1013 +
1691679132.0894268-CDS-H-elongata_contig122452:902..10131691679132.0894268-CDS-H-elongata_contig122452:902..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122452 903..1013 +
1622929720.671116-CDS-H-elongata_contig122452:1154..13551622929720.671116-CDS-H-elongata_contig122452:1154..1355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122452 1155..1355 +
1691679132.1087458-CDS-H-elongata_contig122452:1154..13551691679132.1087458-CDS-H-elongata_contig122452:1154..1355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122452 1155..1355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122452.1715.1

>prot_H-elongata_contig122452.1715.1 ID=prot_H-elongata_contig122452.1715.1|Name=mRNA_H-elongata_contig122452.1715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
VRLAGDSHGKKAFQRYLARGPLAVLPLKGGLASLVWSTTPEHAELLKAMT
EQEFLAEVNDALTRPPAVHGAATSTASQSSPEEKVFGGVSSLAAPPMAAA
SALAEGFVKGAEDVAGALAGLSLGLEGREGGGGGGFSTPPQAVEVRFEGL
*
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mRNA from alignment at H-elongata_contig122452:325..1355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122452.1715.1 ID=mRNA_H-elongata_contig122452.1715.1|Name=mRNA_H-elongata_contig122452.1715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1031bp|location=Sequence derived from alignment at H-elongata_contig122452:325..1355+ (Himanthalia elongata Himel1 dioecious)
GTGCGACTGGCTGGTGATTCCCACGGAAAAAAGGCGTTTCAACGCTACCT
CGCGCGGGGCCCGCTGGCCGTTCTCCCGCTGAAGGGTGGATTGGCGTCGC
TCGTGTGGTCCACCACGCCGGAGCACGCGGAACTCCTCAAGGTAAGAGAA
GAAAAAAAACGCGCTTTAGGGTTAACTGTAAGTGGCGAAGGAGGAACGGC
AACGGAGGGGTGGAGGGGTTGGCAACTGTGTTTGTGTGTGTATTTATTAA
ATTTCACATAACCGCGCAATCCGGCCTCTCTCTGTCATGCTAGCTCTTCT
AGGCTACTCTCGCATTGATCCTCGTAAAGGGGATTATCTGTGTGTCCTGG
CTTCTCAGCGGGTAGTCTAAAGTCTATATTATAAGTTGAGGTTGCTGCTG
CCGCTTTGTACTGTGGACTATTGCCCCCGTAATTCGCAATTTCAATCCGA
TCTCTCCCCCCCAAAAAACAAACACACACACACACACAAACACAAAGACA
AAAAACAAAAACAAAAAAACGCCCGTTCTCCTTATTTCTTCTTACCCCCA
CTGTATTTTTCTCTCTGGGCATACTCAGGCCATGACCGAGCAGGAATTCC
TTGCCGAAGTGAACGATGCGCTCACCCGACCACCAGCCGTTCACGGGGCG
GCAACCTCGACCGCCTCCCAGTCGAGCCCCGAAGAAAAGGTCGCAATGTT
TCCGTCACCCGAGGGACTTTTCCCCTCTCCCTCCTTCTCCTCCAACTTCC
CATTTTCCTCGTTGCTGTCCGCGGTAGCAGCGGGGGGGACGGGCAACCAC
GGCATCCCCGGCGCGTCAGGGGTTTCCAAGGTATTTGGCGGTGTTTCTTC
CCTTGCTGCTCCGCCCATGGCAGCCGCCAGCGCTCTCGCGGAAGGGTTTG
TTAAGGGGGCGGAAGACGTGGCCGGGGCCCTGGCCGGTCTGTCTCTCGGG
CTTGAAGGAAGAGAAGGAGGAGGAGGAGGCGGGTTTTCCACACCTCCGCA
GGCGGTCGAGGTAAGGTTTGAAGGTTTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig122452:325..1355+

>mRNA_H-elongata_contig122452.1715.1 ID=mRNA_H-elongata_contig122452.1715.1|Name=mRNA_H-elongata_contig122452.1715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig122452:325..1355+ (Himanthalia elongata Himel1 dioecious)
GTGCGACTGGCTGGTGATTCCCACGGAAAAAAGGCGTTTCAACGCTACCT
CGCGCGGGGCCCGCTGGCCGTTCTCCCGCTGAAGGGTGGATTGGCGTCGC
TCGTGTGGTCCACCACGCCGGAGCACGCGGAACTCCTCAAGGTGCGACTG
GCTGGTGATTCCCACGGAAAAAAGGCGTTTCAACGCTACCTCGCGCGGGG
CCCGCTGGCCGTTCTCCCGCTGAAGGGTGGATTGGCGTCGCTCGTGTGGT
CCACCACGCCGGAGCACGCGGAACTCCTCAAGGCCATGACCGAGCAGGAA
TTCCTTGCCGAAGTGAACGATGCGCTCACCCGACCACCAGCCGTTCACGG
GGCGGCAACCTCGACCGCCTCCCAGTCGAGCCCCGAAGAAAAGGCCATGA
CCGAGCAGGAATTCCTTGCCGAAGTGAACGATGCGCTCACCCGACCACCA
GCCGTTCACGGGGCGGCAACCTCGACCGCCTCCCAGTCGAGCCCCGAAGA
AAAGGTATTTGGCGGTGTTTCTTCCCTTGCTGCTCCGCCCATGGCAGCCG
CCAGCGCTCTCGCGGAAGGGTTTGTTAAGGGGGCGGAAGACGTGGCCGGG
GCCCTGGCCGGTCTGTCTCTCGGGCTTGAAGGAAGAGAAGGAGGAGGAGG
AGGCGGGTTTTCCACACCTCCGCAGGCGGTCGAGGTAAGGTTTGAAGGTT
TATAAGTATTTGGCGGTGTTTCTTCCCTTGCTGCTCCGCCCATGGCAGCC
GCCAGCGCTCTCGCGGAAGGGTTTGTTAAGGGGGCGGAAGACGTGGCCGG
GGCCCTGGCCGGTCTGTCTCTCGGGCTTGAAGGAAGAGAAGGAGGAGGAG
GAGGCGGGTTTTCCACACCTCCGCAGGCGGTCGAGGTAAGGTTTGAAGGT
TTATAA
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