mRNA_H-elongata_contig122388.1713.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: K0TEN3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEN3_THAOC) HSP 1 Score: 76.3 bits (186), Expect = 8.910e-15 Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 1 PIQVMGAAPPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
P V+ A P ++FLG+ SPGTQIWSRLR AGLE +++Y+LD RRV+LK+R P +LE+V
Sbjct: 691 PDPVIQAPPSDYFLGYGSPGTQIWSRLRSAGLETQRVYALDTRRVMLKVRCPVDRLEDV 749
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S1TPM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM3_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 6.540e-13 Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query: 28 PEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
P FFLGWT+PGTQIW+RLRMAGL V++++ ++ + V+LKI +P ++LE+V
Sbjct: 28 PNFFLGWTAPGTQIWARLRMAGLIVKRIFDINTQVVILKITIPQTRLEQV 77
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S3QEB7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QEB7_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 7.050e-13 Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 19 AAPPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
A P +FFLG+ SPGTQIW RLR AGLE +++Y+LD RRV++K+R P +L +V
Sbjct: 1172 APPSDFFLGFRSPGTQIWGRLRQAGLETDRIYALDTRRVMIKVRCPADRLMDV 1224
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: B8BRZ9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRZ9_THAPS) HSP 1 Score: 70.1 bits (170), Expect = 1.320e-12 Identity = 30/55 (54.55%), Postives = 46/55 (83.64%), Query Frame = 1
Query: 16 GAAPP-EFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
G APP ++FLG++SPGTQIW RLR AGL+ +++Y+LD R+V++K+R P +L++V
Sbjct: 706 GVAPPSDYFLGFSSPGTQIWGRLRQAGLDTQRVYALDTRKVMIKVRCPIDRLQDV 760
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A1Z5KN45_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN45_FISSO) HSP 1 Score: 68.2 bits (165), Expect = 6.270e-12 Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 25 PPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
P ++FLG+ SPGT IWSRLR AGLE +++Y+LDRR V++KIR P +L +V
Sbjct: 870 PSDYFLGFRSPGTSIWSRLRQAGLETQRVYALDRRSVMIKIRCPNDRLMDV 920
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: B7G9W7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9W7_PHATC) HSP 1 Score: 68.2 bits (165), Expect = 6.270e-12 Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 16 GAAPP--EFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
GA PP ++FLG+ S GT IWSRLR AGLE +++YSLD RRVL+K+R P+ +L +V
Sbjct: 836 GALPPPSDYFLGFKSAGTSIWSRLRQAGLETQRVYSLDPRRVLIKVRCPSDRLMDV 891
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S4HJC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJC6_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.590e-11 Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 25 PPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
P ++FLG+ S GTQIWSRLR AGLE +++Y+LD RRV++K+R P +L +V
Sbjct: 593 PSDYFLGFKSSGTQIWSRLRQAGLETQRIYALDSRRVMIKVRCPADRLMDV 643
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S2EGT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGT0_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 7.640e-11 Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 25 PPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
P ++FLG+ S GTQIWSRLR AGLE ++Y+LD++RV++K+R P +L +V
Sbjct: 776 PSDYFLGFKSSGTQIWSRLRQAGLETTRIYALDKKRVMIKLRCPPERLMDV 826
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S2JXK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JXK3_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.040e-10 Identity = 27/51 (52.94%), Postives = 42/51 (82.35%), Query Frame = 1
Query: 25 PPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
P ++FLG++S GT+IW+RLR AGLE +++Y LDR+RV+L +R P +L++V
Sbjct: 516 PSDYFLGFSSAGTKIWARLRQAGLETQRVYGLDRKRVMLLVRCPEDRLQDV 566
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A482RUE1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUE1_9ARCH) HSP 1 Score: 60.5 bits (145), Expect = 3.250e-9 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 22 APPEF----FLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
APP FLGW S GTQIW+RL++AGL+V+ +YS D RV+LK++ P +LE++
Sbjct: 196 APPSLPIAQFLGWNSAGTQIWARLKLAGLDVKVVYSYDLYRVILKLKCPAWRLEQM 251 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122388.1713.1 >prot_H-elongata_contig122388.1713.1 ID=prot_H-elongata_contig122388.1713.1|Name=mRNA_H-elongata_contig122388.1713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp MGAAPPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSback to top mRNA from alignment at H-elongata_contig122388:1585..1761+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122388.1713.1 ID=mRNA_H-elongata_contig122388.1713.1|Name=mRNA_H-elongata_contig122388.1713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig122388:1585..1761+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122388:1585..1761+ >mRNA_H-elongata_contig122388.1713.1 ID=mRNA_H-elongata_contig122388.1713.1|Name=mRNA_H-elongata_contig122388.1713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig122388:1585..1761+ (Himanthalia elongata Himel1 dioecious)back to top |