mRNA_H-elongata_contig122388.1713.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122388.1713.1
Unique NamemRNA_H-elongata_contig122388.1713.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: K0TEN3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEN3_THAOC)

HSP 1 Score: 76.3 bits (186), Expect = 8.910e-15
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 PIQVMGAAPPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            P  V+ A P ++FLG+ SPGTQIWSRLR AGLE +++Y+LD RRV+LK+R P  +LE+V
Sbjct:  691 PDPVIQAPPSDYFLGYGSPGTQIWSRLRSAGLETQRVYALDTRRVMLKVRCPVDRLEDV 749          
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S1TPM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.540e-13
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   28 PEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            P FFLGWT+PGTQIW+RLRMAGL V++++ ++ + V+LKI +P ++LE+V
Sbjct:   28 PNFFLGWTAPGTQIWARLRMAGLIVKRIFDINTQVVILKITIPQTRLEQV 77          
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S3QEB7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QEB7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.050e-13
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   19 AAPPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            A P +FFLG+ SPGTQIW RLR AGLE +++Y+LD RRV++K+R P  +L +V
Sbjct: 1172 APPSDFFLGFRSPGTQIWGRLRQAGLETDRIYALDTRRVMIKVRCPADRLMDV 1224          
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: B8BRZ9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRZ9_THAPS)

HSP 1 Score: 70.1 bits (170), Expect = 1.320e-12
Identity = 30/55 (54.55%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   16 GAAPP-EFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            G APP ++FLG++SPGTQIW RLR AGL+ +++Y+LD R+V++K+R P  +L++V
Sbjct:  706 GVAPPSDYFLGFSSPGTQIWGRLRQAGLDTQRVYALDTRKVMIKVRCPIDRLQDV 760          
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A1Z5KN45_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN45_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 6.270e-12
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   25 PPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            P ++FLG+ SPGT IWSRLR AGLE +++Y+LDRR V++KIR P  +L +V
Sbjct:  870 PSDYFLGFRSPGTSIWSRLRQAGLETQRVYALDRRSVMIKIRCPNDRLMDV 920          
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: B7G9W7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9W7_PHATC)

HSP 1 Score: 68.2 bits (165), Expect = 6.270e-12
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   16 GAAPP--EFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            GA PP  ++FLG+ S GT IWSRLR AGLE +++YSLD RRVL+K+R P+ +L +V
Sbjct:  836 GALPPPSDYFLGFKSAGTSIWSRLRQAGLETQRVYSLDPRRVLIKVRCPSDRLMDV 891          
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S4HJC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJC6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.590e-11
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   25 PPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            P ++FLG+ S GTQIWSRLR AGLE +++Y+LD RRV++K+R P  +L +V
Sbjct:  593 PSDYFLGFKSSGTQIWSRLRQAGLETQRIYALDSRRVMIKVRCPADRLMDV 643          
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S2EGT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGT0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.640e-11
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   25 PPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            P ++FLG+ S GTQIWSRLR AGLE  ++Y+LD++RV++K+R P  +L +V
Sbjct:  776 PSDYFLGFKSSGTQIWSRLRQAGLETTRIYALDKKRVMIKLRCPPERLMDV 826          
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A7S2JXK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JXK3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.040e-10
Identity = 27/51 (52.94%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   25 PPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            P ++FLG++S GT+IW+RLR AGLE +++Y LDR+RV+L +R P  +L++V
Sbjct:  516 PSDYFLGFSSAGTKIWARLRQAGLETQRVYGLDRKRVMLLVRCPEDRLQDV 566          
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Match: A0A482RUE1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUE1_9ARCH)

HSP 1 Score: 60.5 bits (145), Expect = 3.250e-9
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   22 APPEF----FLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTSKLEEV 177
            APP      FLGW S GTQIW+RL++AGL+V+ +YS D  RV+LK++ P  +LE++
Sbjct:  196 APPSLPIAQFLGWNSAGTQIWARLKLAGLDVKVVYSYDLYRVILKLKCPAWRLEQM 251          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122388.1713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
K0TEN3_THAOC8.910e-1559.32Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S1TPM3_9STRA6.540e-1358.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3QEB7_9STRA7.050e-1358.49Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B8BRZ9_THAPS1.320e-1254.55Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1Z5KN45_FISSO6.270e-1258.82Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7G9W7_PHATC6.270e-1258.93Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S4HJC6_9STRA1.590e-1156.86Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2EGT0_9STRA7.640e-1154.90Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2JXK3_9STRA1.040e-1052.94Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A482RUE1_9ARCH3.250e-951.79Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122388contigH-elongata_contig122388:1585..1761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue8.8e-12
Seed eggNOG ortholog159749.K0TEN3
EggNOG free text desc.Calcium-activated chloride channel
EggNOG OGs2XB2U@2836,KOG2513@1,KOG2513@2759
COG Functional cat.D
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size165
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.507512-UTR-H-elongata_contig122388:1584..15961622929720.507512-UTR-H-elongata_contig122388:1584..1596Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122388 1585..1596 +
1691679132.0239553-UTR-H-elongata_contig122388:1584..15961691679132.0239553-UTR-H-elongata_contig122388:1584..1596Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122388 1585..1596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.5262427-CDS-H-elongata_contig122388:1596..17611622929720.5262427-CDS-H-elongata_contig122388:1596..1761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122388 1597..1761 +
1691679132.0353723-CDS-H-elongata_contig122388:1596..17611691679132.0353723-CDS-H-elongata_contig122388:1596..1761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122388 1597..1761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122388.1713.1prot_H-elongata_contig122388.1713.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122388 1597..1761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122388.1713.1

>prot_H-elongata_contig122388.1713.1 ID=prot_H-elongata_contig122388.1713.1|Name=mRNA_H-elongata_contig122388.1713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MGAAPPEFFLGWTSPGTQIWSRLRMAGLEVEKLYSLDRRRVLLKIRLPTS
KLEEV
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mRNA from alignment at H-elongata_contig122388:1585..1761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122388.1713.1 ID=mRNA_H-elongata_contig122388.1713.1|Name=mRNA_H-elongata_contig122388.1713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig122388:1585..1761+ (Himanthalia elongata Himel1 dioecious)
CCCATTCAGGTCATGGGCGCTGCCCCCCCCGAGTTTTTCCTGGGGTGGAC GAGCCCTGGCACTCAGATCTGGTCGCGGCTCCGAATGGCGGGCTTGGAAG TGGAGAAGCTCTACAGCCTTGACAGGAGACGCGTCCTCCTTAAGATACGT CTCCCGACGAGCAAGCTGGAAGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig122388:1585..1761+

>mRNA_H-elongata_contig122388.1713.1 ID=mRNA_H-elongata_contig122388.1713.1|Name=mRNA_H-elongata_contig122388.1713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig122388:1585..1761+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGCTGCCCCCCCCGAGTTTTTCCTGGGGTGGACGAGCCCTGGCAC
TCAGATCTGGTCGCGGCTCCGAATGGCGGGCTTGGAAGTGGAGAAGCTCT
ACAGCCTTGACAGGAGACGCGTCCTCCTTAAGATACGTCTCCCGACGAGC
AAGCTGGAAGAGGTGATGGGCGCTGCCCCCCCCGAGTTTTTCCTGGGGTG
GACGAGCCCTGGCACTCAGATCTGGTCGCGGCTCCGAATGGCGGGCTTGG
AAGTGGAGAAGCTCTACAGCCTTGACAGGAGACGCGTCCTCCTTAAGATA
CGTCTCCCGACGAGCAAGCTGGAAGAGGTG
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