prot_H-elongata_contig97818.17122.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97818.17122.1
Unique Nameprot_H-elongata_contig97818.17122.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length96
Homology
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BLAST of mRNA_H-elongata_contig97818.17122.1 vs. uniprot
Match: D8LTM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM4_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.630e-27
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 0 
Query:    1 MGILTVVGHSADSVVNALGFIILLCTRRKDLWLWAAGIKREHSRAIKILCLAALGMAGWLLGMTVIGFLVAVEGSIGSAAIAFYSREFDLDCDSSV 96
            MGILTVVG++ D ++NA+G  +LL  RRK L       +    R +K LCLA+L MAGWLLG T+IGFL+AV+G IG+AA+AFYS EFDLDC +SV
Sbjct:   75 MGILTVVGNATDGLLNAVGLAVLLYGRRKPL-------QEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSV 163
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BLAST of mRNA_H-elongata_contig97818.17122.1 vs. uniprot
Match: A0A6H5JU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU38_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.590e-27
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 0 
Query:    1 MGILTVVGHSADSVVNALGFIILLCTRRKDLWLWAAGIKREHSRAIKILCLAALGMAGWLLGMTVIGFLVAVEGSIGSAAIAFYSREFDLDCDSSV 96
            MGILTVVG++ D ++NA+G  +LL  RRK L       +    R +K LCLA+L MAGWL+GMTVIGFL+AV+G IG+AA+AFYS EFDLDC +SV
Sbjct:  278 MGILTVVGNATDGLLNAVGLAVLLYGRRKPL-------QEAQCRMVKRLCLASLAMAGWLMGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSV 366
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97818.17122.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTM4_ECTSI2.630e-2758.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU38_9PHAE7.590e-2759.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..96
NoneNo IPR availableTMHMMTMhelixcoord: 48..70
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97818contigH-elongata_contig97818:374..1250 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97818.17122.1mRNA_H-elongata_contig97818.17122.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97818 347..1250 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97818.17122.1 ID=prot_H-elongata_contig97818.17122.1|Name=mRNA_H-elongata_contig97818.17122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MGILTVVGHSADSVVNALGFIILLCTRRKDLWLWAAGIKREHSRAIKILC
LAALGMAGWLLGMTVIGFLVAVEGSIGSAAIAFYSREFDLDCDSSV
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