mRNA_H-elongata_contig97818.17122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97818.17122.1
Unique NamemRNA_H-elongata_contig97818.17122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig97818.17122.1 vs. uniprot
Match: D8LTM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM4_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.010e-30
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    1 QELSVPGAIMGILTVVGHSADSVVNALGFIILLCTRRKDLWLWAAGIKREHSRAIKILCLAALGMAGWLLGMTVIGFLVAVEGSIGSAAIAFYSREFDLDCDSSV 315
            +E+S+ GA+MGILTVVG++ D ++NA+G  +LL  RRK L       +    R +K LCLA+L MAGWLLG T+IGFL+AV+G IG+AA+AFYS EFDLDC +SV
Sbjct:   66 EEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPL-------QEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSV 163
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BLAST of mRNA_H-elongata_contig97818.17122.1 vs. uniprot
Match: A0A6H5JU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU38_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 4.340e-30
Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 QELSVPGAIMGILTVVGHSADSVVNALGFIILLCTRRKDLWLWAAGIKREHSRAIKILCLAALGMAGWLLGMTVIGFLVAVEGSIGSAAIAFYSREFDLDCDSSV 315
            +E+S+ GA+MGILTVVG++ D ++NA+G  +LL  RRK L       +    R +K LCLA+L MAGWL+GMTVIGFL+AV+G IG+AA+AFYS EFDLDC +SV
Sbjct:  269 EEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPL-------QEAQCRMVKRLCLASLAMAGWLMGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSV 366
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97818.17122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTM4_ECTSI1.010e-3057.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU38_9PHAE4.340e-3058.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97818contigH-elongata_contig97818:347..1250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003540.1
Exons2
Model size315
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97818.17122.1prot_H-elongata_contig97818.17122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97818 374..1250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931368.3113759-UTR-H-elongata_contig97818:346..3731622931368.3113759-UTR-H-elongata_contig97818:346..373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig97818 347..373 +
1691679807.7575433-UTR-H-elongata_contig97818:346..3731691679807.7575433-UTR-H-elongata_contig97818:346..373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig97818 347..373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931368.3300467-CDS-H-elongata_contig97818:373..4601622931368.3300467-CDS-H-elongata_contig97818:373..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97818 374..460 +
1691679807.7669642-CDS-H-elongata_contig97818:373..4601691679807.7669642-CDS-H-elongata_contig97818:373..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97818 374..460 +
1622931368.3439007-CDS-H-elongata_contig97818:1049..12501622931368.3439007-CDS-H-elongata_contig97818:1049..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97818 1050..1250 +
1691679807.7766194-CDS-H-elongata_contig97818:1049..12501691679807.7766194-CDS-H-elongata_contig97818:1049..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97818 1050..1250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97818.17122.1

>prot_H-elongata_contig97818.17122.1 ID=prot_H-elongata_contig97818.17122.1|Name=mRNA_H-elongata_contig97818.17122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MGILTVVGHSADSVVNALGFIILLCTRRKDLWLWAAGIKREHSRAIKILC
LAALGMAGWLLGMTVIGFLVAVEGSIGSAAIAFYSREFDLDCDSSV
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mRNA from alignment at H-elongata_contig97818:347..1250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97818.17122.1 ID=mRNA_H-elongata_contig97818.17122.1|Name=mRNA_H-elongata_contig97818.17122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=904bp|location=Sequence derived from alignment at H-elongata_contig97818:347..1250+ (Himanthalia elongata Himel1 dioecious)
CAGGAGCTAAGCGTACCGGGCGCGATCATGGGGATACTGACGGTGGTGGG
GCACTCCGCTGATTCGGTCGTGAACGCTTTGGGGTTCATTATCCTATTGT
GCACAAGACGAAAGGTGAGGATTTATATGAATATTAGACTAATATATATT
GCTTCCTCTAGTTCATTGAACCATAGAGCAGACCTTTTTTGTCGCAATAT
TTCTTTCTCCGTAGTTTAGACGATATTATATATATATATAATATTCTGTA
CTGTGTAGCTTTTTGTAGTCATGAATACCTGCTCACTGCAAAACGTTGGA
CGGAGGTCGCGTTTCTTCCAATACATACTTTTGTGCGGACAAAAAAAATA
TTATCTCGAGTTCTAAACAGATACATACAGACCTGCTCCTTGAAAGATTC
CCCTTGAAAGGCTCCCCTCGGTGTCGCCTAGAACTCCGGGTTTCGTGAGT
CCGTAGGCGTATATAAGGGAGGGTGTGTTGGTGGAAATGCCCCGGGTTGG
CTTGGTTTGGCTTAGCGCTGCTTTACATACCGTGACCATCGATCGATATA
TATATATATTTTTTTTTCTTCTCATTTTACACTTTTTTACTTTTGAAGAA
AGAAAAAATAAGTTCTCCTGAGTCTGCTTCCCTGCCTTCATCGGGCCGTC
CTATCCCCCCCCCCCCGCTGCGCATAAAATGGGGGGCCTCAAAGGCGGGC
GAGGACTTGTGGCTTTGGGCCGCGGGCATAAAAAGGGAGCATTCAAGGGC
TATCAAGATATTGTGCCTTGCGGCGCTGGGTATGGCCGGATGGCTGCTGG
GGATGACAGTCATCGGCTTCCTCGTAGCCGTCGAAGGATCCATCGGGTCG
GCGGCGATCGCCTTCTATTCGCGGGAGTTTGACCTCGATTGCGATAGCTC
GGTG
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Coding sequence (CDS) from alignment at H-elongata_contig97818:347..1250+

>mRNA_H-elongata_contig97818.17122.1 ID=mRNA_H-elongata_contig97818.17122.1|Name=mRNA_H-elongata_contig97818.17122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig97818:347..1250+ (Himanthalia elongata Himel1 dioecious)
ATGGGGATACTGACGGTGGTGGGGCACTCCGCTGATTCGGTCGTGAACGC
TTTGGGGTTCATTATCCTATTGTGCACAAGACGAAAGATGGGGATACTGA
CGGTGGTGGGGCACTCCGCTGATTCGGTCGTGAACGCTTTGGGGTTCATT
ATCCTATTGTGCACAAGACGAAAGGACTTGTGGCTTTGGGCCGCGGGCAT
AAAAAGGGAGCATTCAAGGGCTATCAAGATATTGTGCCTTGCGGCGCTGG
GTATGGCCGGATGGCTGCTGGGGATGACAGTCATCGGCTTCCTCGTAGCC
GTCGAAGGATCCATCGGGTCGGCGGCGATCGCCTTCTATTCGCGGGAGTT
TGACCTCGATTGCGATAGCTCGGTGGACTTGTGGCTTTGGGCCGCGGGCA
TAAAAAGGGAGCATTCAAGGGCTATCAAGATATTGTGCCTTGCGGCGCTG
GGTATGGCCGGATGGCTGCTGGGGATGACAGTCATCGGCTTCCTCGTAGC
CGTCGAAGGATCCATCGGGTCGGCGGCGATCGCCTTCTATTCGCGGGAGT
TTGACCTCGATTGCGATAGCTCGGTG
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