mRNA_H-elongata_contig12236.1709.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12236.1709.1
Unique NamemRNA_H-elongata_contig12236.1709.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 4.830e-46
Identity = 106/197 (53.81%), Postives = 128/197 (64.97%), Query Frame = 1
Query:    1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSA-----------------------------GKPFRS----DQQVQLRVERLIRRQPTT----DNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGT-TEQSALGKLGLSTAIGAAEQSERMTVPHV 477
            TRAPR+Y+ G+  ++H+GQ V+L+P+QTRYL+SVMRLR+GSPVRVFDG +GE+ A                             G+  RS    D+ V+LRVE L RRQP      D   E    PEIEL+FAPIRK RLK+LVEKAVEVGASRLTPVLTARTQ G  ++ S L +LG  TA+ AAEQ ERMTVP V
Sbjct:  141 TRAPRVYLNGA--NLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPV 335          
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 4.340e-29
Identity = 81/159 (50.94%), Postives = 96/159 (60.38%), Query Frame = 1
Query:  103 MRLREGSPVRVFDGFSGEYSA---------------------------GKPFRS----DQQVQLRVERLIRRQPTTDNAD----EQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGT-TEQSALGKLGLSTAIGAAEQSERMTVP 471
            MRLR+G+PVRVFDG +GE+ A                           G+  RS    ++ ++LRVE L RRQP          E    PEIEL+FAPIRK RLK+LVEKAVEVGASRLTPVLTARTQ G  ++ S L +LG  TA+ AAEQ ERMTVP
Sbjct:    1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVP 159          
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A259M1G2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Hyphomonas sp. 34-62-18 TaxID=1970392 RepID=A0A259M1G2_9PROT)

HSP 1 Score: 97.4 bits (241), Expect = 1.140e-21
Identity = 59/158 (37.34%), Postives = 91/158 (57.59%), Query Frame = 1
Query:   10 PRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGD 483
            PRLYV      +    V+ L  +Q+ YL+ V+RL EG+PVR+F+G  GE+SA     S ++ ++      R+QP    AD       + L+FAP++K +  +++EKA E+GA+R+ PVLT RTQ  T       K+ L     AAEQ+ER+ +P + +
Sbjct:    5 PRLYVDAP---LAESGVIALDDEQSNYLLRVLRLEEGAPVRLFNGRDGEWSAAVRKVSGKRAEVIPAAQTRKQPEHAGAD-------LTLLFAPVKKDQTDLIIEKATELGAARMVPVLTERTQTRTVRTDRFRKIALE----AAEQTERLGLPEIAE 148          
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: F0YSM2_AURAN (16S rRNA (uracil(1498)-N(3))-methyltransferase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSM2_AURAN)

HSP 1 Score: 94.4 bits (233), Expect = 4.020e-21
Identity = 70/172 (40.70%), Postives = 93/172 (54.07%), Query Frame = 1
Query:    1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQ---PG--MPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGL---STAIGAAEQSERMTVPHVGDTAE 492
            T APRL++G          V ELSP Q RY+ +VMRLREG  +R F    GE++              VE   RR  T   A +    PG   P ++L FAP+RK R  +L+EKAVE+GA+RL PV T R      E+++L  LG    ++A+ AAEQ ER+ VP V D  +
Sbjct:   26 TNAPRLWLGDDRT-ADAASVWELSPAQHRYVATVMRLREGDALRCFGAAMGEWACA------------VETTTRRGTTVAAAVQTRPPPGDETPRLDLYFAPLRKKRTSLLIEKAVELGATRLAPVKTERV-----ERASLAALGAGIHASAVEAAEQCERLRVPVVEDVVD 179          
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A4Q5XQ17_9PROT (Ribosomal RNA small subunit methyltransferase E n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A4Q5XQ17_9PROT)

HSP 1 Score: 95.5 bits (236), Expect = 6.050e-21
Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = 1
Query:    1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHV 477
            +  PRL+V      +  G    +  DQ  YL  V+RL  G PVRVF+G  GE+ A     +    +L +   +R         EQ  +P++ L+FAP++K R   LVEKAVE+GA+ + PV+T RT A T     L +L    AI AAEQ+ER+ VP V
Sbjct:    2 SATPRLHVAPD---LSEGADTPIDGDQAHYLTRVLRLEIGDPVRVFNGRDGEFDASVSASTKSTARLTLGARVR---------EQAAVPDLWLLFAPLKKERTDFLVEKAVELGAAEILPVITERTDAKTVRVDRLARL----AIEAAEQTERLDVPPV 144          
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A399RFL3_9PROT (Ribosomal RNA small subunit methyltransferase E n=4 Tax=Henriciella TaxID=453849 RepID=A0A399RFL3_9PROT)

HSP 1 Score: 94.7 bits (234), Expect = 1.210e-20
Identity = 63/161 (39.13%), Postives = 88/161 (54.66%), Query Frame = 1
Query:    1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGD 483
            +  PRL++      +  G+ V LS +Q  Y++ VMRL EG+PVRVF+G  GE+ A     S ++  +  ER  R  P  +  D       + L FAP++K R   +VEKA E+G  R+ PV+T RTQ+    +  L     S  I AAEQ+ERM VP V D
Sbjct:    5 SSVPRLFIDAG---LSSGEKVSLSDNQANYILRVMRLGEGAPVRVFNGRDGEWIAAVVPESGKRASIVPERQTR--PQVETLD-------LTLFFAPLKKARTDFVVEKACELGVRRIQPVMTERTQSSRVRRDRLQ----SVVIEAAEQTERMDVPEVFD 149          
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: UPI000685ABB1 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Henriciella marina TaxID=453851 RepID=UPI000685ABB1)

HSP 1 Score: 93.6 bits (231), Expect = 3.150e-20
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 1
Query:   10 PRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGD 483
            PRL+V      ++ G+   LS +Q+ Y++ VMRL EG PVRVF+G  GE+ A     S ++  +  +R  R Q  T         P++ L FAP++K R   +VEKA E+G  ++ PV+T RTQ+    +  L     S  I AAEQ+ERM VP V D
Sbjct:    5 PRLFVDSP---LNEGEKAALSDNQSNYVLRVMRLSEGDPVRVFNGRDGEWVARLVQESGKRASIVPDRQTRPQVET---------PDLTLFFAPLKKTRTDFVVEKACELGVRKIQPVMTERTQSSRVRRDRLQ----SVVIEAAEQTERMDVPEVFD 146          
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A3D6A1M1_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Maricaulaceae TaxID=2800061 RepID=A0A3D6A1M1_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 8.990e-20
Identity = 63/158 (39.87%), Postives = 91/158 (57.59%), Query Frame = 1
Query:   10 PRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGD 483
            PRLYV      +  G  + L  +Q  YL++VMR   GSPVRVF+G  GE+ A     S +   L+VE  +R         EQ G+P + L FAP++K R   +VEKA E+GA+ + PV+T RTQ+   E+    +L ++ A  AAEQ+ER+ +P V +
Sbjct:    5 PRLYVDAP---LDDGAELILPREQAHYLVNVMRREAGSPVRVFNGRDGEWQAVVADASRKGASLQVETRLR---------EQVGVPPLRLCFAPVKKARTDFIVEKATELGAAVIQPVITRRTQS---ERVRTDRL-MALATEAAEQTERLCLPVVSE 146          
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A5M6Z8R7_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Alkalicaulis satelles TaxID=2609175 RepID=A0A5M6Z8R7_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 1.010e-19
Identity = 63/163 (38.65%), Postives = 87/163 (53.37%), Query Frame = 1
Query:   10 PRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGDTAEPL 498
            PRL+V      ++ G  + L  DQ  YL+SVMR + G  VRVF+G  GE+ A       ++ +L +         TD   +Q   P++ L FAP++K R   +VEKA E+GA  + PV+T RT A       LG L    A  AAEQ+ER+ VP +G   EPL
Sbjct:    5 PRLFVDAP---LNQGAALILERDQAHYLVSVMRRQPGDGVRVFNGRDGEWRAVLETSGKREARLAL---------TDRLRDQTAGPDLTLYFAPVKKARTDFIVEKATELGARAIIPVITRRTNAERVRTDRLGAL----AREAAEQTERLDVPQIG---EPL 148          
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A0P7V371_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Oceanicaulis sp. HLUCCA04 TaxID=1666904 RepID=A0A0P7V371_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 1.260e-19
Identity = 62/166 (37.35%), Postives = 93/166 (56.02%), Query Frame = 1
Query:    1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGDTAEPL 498
            +  PRL+V      +  G  + L  +Q  YL++VMR   G+PVR+F+G  GE+ A     S +   L VE  +R         EQ G+P + L FAP++K R   +VEKA E+GAS + PV+T RTQ+   E+    +L ++ A  A EQ+ER+ +P   D +EP+
Sbjct:    2 STTPRLFVDAP---LAEGAHITLPREQAHYLINVMRRETGAPVRIFNGRDGEWQAVVSEASRKSAVLAVESRLR---------EQTGVPPLRLCFAPVKKSRTDFIVEKATELGASAIQPVITRRTQS---ERVRTDRL-MALATEATEQTERLCLP---DVSEPV 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y9_9PHAE4.830e-4653.8116S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
D7G8G1_ECTSI4.340e-2950.9416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A259M1G2_9PROT1.140e-2137.34Ribosomal RNA small subunit methyltransferase E n=... [more]
F0YSM2_AURAN4.020e-2140.7016S rRNA (uracil(1498)-N(3))-methyltransferase (Fr... [more]
A0A4Q5XQ17_9PROT6.050e-2138.99Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A399RFL3_9PROT1.210e-2039.13Ribosomal RNA small subunit methyltransferase E n=... [more]
UPI000685ABB13.150e-2039.2416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A3D6A1M1_9PROT8.990e-2039.87Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A5M6Z8R7_9PROT1.010e-1938.65Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A0P7V371_9PROT1.260e-1937.35Ribosomal RNA small subunit methyltransferase E n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12236contigH-elongata_contig12236:241..783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue4.2e-25
Seed eggNOG ortholog2880.D7G8G1
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2SA8N@2759,COG1385@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.25622-CDS-H-elongata_contig12236:240..5791622929720.25622-CDS-H-elongata_contig12236:240..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12236 241..579 -
1691679131.908197-CDS-H-elongata_contig12236:240..5791691679131.908197-CDS-H-elongata_contig12236:240..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12236 241..579 -
1622929720.2691374-CDS-H-elongata_contig12236:618..7831622929720.2691374-CDS-H-elongata_contig12236:618..783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12236 619..783 -
1691679131.9197674-CDS-H-elongata_contig12236:618..7831691679131.9197674-CDS-H-elongata_contig12236:618..783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12236 619..783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12236.1709.1prot_H-elongata_contig12236.1709.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12236 241..783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12236.1709.1

>prot_H-elongata_contig12236.1709.1 ID=prot_H-elongata_contig12236.1709.1|Name=mRNA_H-elongata_contig12236.1709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFS
GEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRK
HRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQ
SERMTVPHVGDTAEPLVS
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mRNA from alignment at H-elongata_contig12236:241..783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12236.1709.1 ID=mRNA_H-elongata_contig12236.1709.1|Name=mRNA_H-elongata_contig12236.1709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig12236:241..783- (Himanthalia elongata Himel1 dioecious)
ACACGCGCCCCGAGGTTGTACGTTGGTGGGAGCGGGTTTCACATTCATAT CGGTCAAGTCGTCGAGCTATCACCCGACCAGACTCGTTACCTAATGAGCG TCATGCGCTTGCGGGAAGGGAGTCCAGTGCGCGTTTTTGACGGATTTAGC GGAGAGTACAGCGCCGTAGTGAGCGGCGTTGGTGGTAATAAGAAGGTTCG AAAGGGGAAGCCATTCCGAAGCGACCAGCAGGTGCAGTTACGTGTGGAAC GCCTCATCCGGCGACAACCTACGACTGACAACGCGGACGAGCAGCCGGGG ATGCCAGAAATAGAGCTCATGTTCGCGCCAATACGAAAGCACAGGCTGAA GATTTTGGTTGAAAAAGCTGTCGAGGTTGGGGCTTCGCGGCTTACACCCG TGCTCACGGCCCGCACACAGGCAGGTACCACAGAGCAAAGCGCCCTCGGC AAGCTCGGACTCAGCACGGCCATTGGGGCAGCGGAACAGTCCGAGCGAAT GACAGTGCCCCACGTCGGAGATACGGCGGAACCGCTCGTGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig12236:241..783-

>mRNA_H-elongata_contig12236.1709.1 ID=mRNA_H-elongata_contig12236.1709.1|Name=mRNA_H-elongata_contig12236.1709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig12236:241..783- (Himanthalia elongata Himel1 dioecious)
ACACGCGCCCCGAGGTTGTACGTTGGTGGGAGCGGGTTTCACATTCATAT
CGGTCAAGTCGTCGAGCTATCACCCGACCAGACTCGTTACCTAATGAGCG
TCATGCGCTTGCGGGAAGGGAGTCCAGTGCGCGTTTTTGACGGATTTAGC
GGAGAGTACAGCGCCACACGCGCCCCGAGGTTGTACGTTGGTGGGAGCGG
GTTTCACATTCATATCGGTCAAGTCGTCGAGCTATCACCCGACCAGACTC
GTTACCTAATGAGCGTCATGCGCTTGCGGGAAGGGAGTCCAGTGCGCGTT
TTTGACGGATTTAGCGGAGAGTACAGCGCCGGGAAGCCATTCCGAAGCGA
CCAGCAGGTGCAGTTACGTGTGGAACGCCTCATCCGGCGACAACCTACGA
CTGACAACGCGGACGAGCAGCCGGGGATGCCAGAAATAGAGCTCATGTTC
GCGCCAATACGAAAGCACAGGCTGAAGATTTTGGTTGAAAAAGCTGTCGA
GGTTGGGGCTTCGCGGCTTACACCCGTGCTCACGGCCCGCACACAGGCAG
GTACCACAGAGCAAAGCGCCCTCGGCAAGCTCGGACTCAGCACGGCCATT
GGGGCAGCGGAACAGTCCGAGCGAATGACAGTGCCCCACGTCGGAGATAC
GGCGGAACCGCTCGTGTCCGGGAAGCCATTCCGAAGCGACCAGCAGGTGC
AGTTACGTGTGGAACGCCTCATCCGGCGACAACCTACGACTGACAACGCG
GACGAGCAGCCGGGGATGCCAGAAATAGAGCTCATGTTCGCGCCAATACG
AAAGCACAGGCTGAAGATTTTGGTTGAAAAAGCTGTCGAGGTTGGGGCTT
CGCGGCTTACACCCGTGCTCACGGCCCGCACACAGGCAGGTACCACAGAG
CAAAGCGCCCTCGGCAAGCTCGGACTCAGCACGGCCATTGGGGCAGCGGA
ACAGTCCGAGCGAATGACAGTGCCCCACGTCGGAGATACGGCGGAACCGC
TCGTGTCC
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