mRNA_H-elongata_contig12236.1710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12236.1710.1
Unique NamemRNA_H-elongata_contig12236.1710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.180e-20
Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query:    3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
            SG  WS   RY  CVPI+ V+T+W   G +     R QLPL LCWAITMHKSQGQT  KAV DLG  E   GLTFV
Sbjct:  155 SGGEWSSQERYRRCVPISPVDTTWQDGGTQ----VRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 226          
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.370e-19
Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query:    3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
            SG  WS   RY  CVPI+ V+T+W   G +     R QLPL LCWAITMHKSQGQT  KAV DLG  E   GLTFV
Sbjct:  329 SGGEWSSQERYRRCVPISPVDTTWQDGGTQ----VRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 400          
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.520e-19
Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query:    3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
            SG  WS   RY  CVPI+ V+T+W   G +     R QLPL LCWAITMHKSQGQT  KAV DLG  E   GLTFV
Sbjct:   46 SGGEWSSQERYRRCVPISPVDTTWQDGGTQ----VRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 117          
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.140e-19
Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query:    3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
            SG  WS   RY  CVPI+ V+T+W   G +     R QLPL LCWAITMHKSQGQT  KAV DLG  E   GLTFV
Sbjct: 1460 SGGEWSSQERYRRCVPISPVDTTWQDGGTQ----VRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 1531          
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.080e-12
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = -2
Query:    3 GDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 149
            G++   + R QLPL LCWAITMHKSQGQT  KAV DLG  E   GLTFV
Sbjct:    7 GEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 55          
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.100e-12
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = -2
Query:    3 TGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 152
            +G++   + R QLPL LCWAITMHKSQGQT  KAV DLG  E   GLTFV
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 53          
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.970e-12
Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = -2
Query:    3 WSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 161
            WS    +   + R QLPL LCWAITMHKSQGQT  KAV DLG  E   GLTFV
Sbjct:   67 WSTGRKDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 119          
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.480e-12
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = -2
Query:    3 TGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 152
            +G++   + R QLPL LCWAITMHKSQGQT  KAV DLG  E   GLTFV
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 53          
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6S7JUH6_PARCT (ATP-dependent DNA helicase PIF1-like n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JUH6_PARCT)

HSP 1 Score: 65.9 bits (159), Expect = 2.050e-11
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = -2
Query:    3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
            SGPA+        CVP+      W A G   K  SR+Q+PL L +A+T+HKSQGQT  K V DLGK E  AG TFV
Sbjct:   18 SGPAFL--DACSKCVPVPPKVFEWVADG---KYLSRQQVPLRLRYAMTIHKSQGQTLTKTVVDLGKGEKVAGCTFV 88          
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: UPI001069C52E (ATP-dependent DNA helicase PIF1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069C52E)

HSP 1 Score: 68.6 bits (166), Expect = 2.210e-11
Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = -2
Query:    3 PAWSGDPRYEVC---VPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 224
            PA+SG    + C   +P+      W A G   K  SR+QLPL L +A+T+HKSQGQT  KAV DLGK E  AG TFV
Sbjct:  222 PAYSGPAFLQECSKCIPVPPRLFEWMADG---KYLSRQQLPLRLRYAMTIHKSQGQTLTKAVVDLGKGERVAGCTFV 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE5.180e-2059.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE2.370e-1959.21Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE2.520e-1959.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE3.140e-1959.21ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5KSF1_9PHAE2.080e-1265.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE3.100e-1264.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE3.970e-1262.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE5.480e-1264.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7JUH6_PARCT2.050e-1150.00ATP-dependent DNA helicase PIF1-like n=3 Tax=Param... [more]
UPI001069C52E2.210e-1150.65ATP-dependent DNA helicase PIF1-like n=1 Tax=Dendr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12236contigH-elongata_contig12236:5734..6051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size320
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.2134118-CDS-H-elongata_contig12236:5733..60511622929720.2134118-CDS-H-elongata_contig12236:5733..6051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12236 5734..6051 +
1691679131.899452-CDS-H-elongata_contig12236:5733..60511691679131.899452-CDS-H-elongata_contig12236:5733..6051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12236 5734..6051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12236.1710.1prot_H-elongata_contig12236.1710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12236 5734..6051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12236.1710.1

>prot_H-elongata_contig12236.1710.1 ID=prot_H-elongata_contig12236.1710.1|Name=mRNA_H-elongata_contig12236.1710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
LTKVSPAVPSDFPRSNTAFFAVCPWLLCMVIAQHSPRGSCSRDSCFLSSP
VALHEVSTAAMGTHTSYRGSPDHAGPEPSPLEPIQCQQLSPEYRLPASFP
SIGYV*
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mRNA from alignment at H-elongata_contig12236:5734..6051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12236.1710.1 ID=mRNA_H-elongata_contig12236.1710.1|Name=mRNA_H-elongata_contig12236.1710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig12236:5734..6051+ (Himanthalia elongata Himel1 dioecious)
CTGACAAAGGTCAGTCCAGCGGTTCCTTCGGACTTCCCCAGGTCGAACAC CGCCTTCTTCGCCGTCTGTCCCTGGCTCTTGTGCATGGTAATCGCCCAGC ACAGTCCGAGAGGTAGCTGCTCTCGCGACTCCTGCTTTCTCTCGTCCCCC GTGGCACTCCATGAAGTCTCTACCGCAGCGATGGGGACACACACCTCATA CCGCGGGTCACCAGACCACGCTGGGCCGGAGCCTTCTCCCCTGGAGCCCA TACAATGTCAACAACTTTCCCCCGAATACCGTTTACCAGCCTCATTTCCG TCCATAGGTTACGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig12236:5734..6051+

>mRNA_H-elongata_contig12236.1710.1 ID=mRNA_H-elongata_contig12236.1710.1|Name=mRNA_H-elongata_contig12236.1710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig12236:5734..6051+ (Himanthalia elongata Himel1 dioecious)
CTGACAAAGGTCAGTCCAGCGGTTCCTTCGGACTTCCCCAGGTCGAACAC
CGCCTTCTTCGCCGTCTGTCCCTGGCTCTTGTGCATGGTAATCGCCCAGC
ACAGTCCGAGAGGTAGCTGCTCTCGCGACTCCTGCTTTCTCTCGTCCCCC
GTGGCACTCCATGAAGTCTCTACCGCAGCGATGGGGACACACACCTCATA
CCGCGGGTCACCAGACCACGCTGGGCCGGAGCCTTCTCCCCTGGAGCCCA
TACAATGTCAACAACTTTCCCCCGAATACCGTTTACCAGCCTCATTTCCG
TCCATAGGTTACGTGTGACTGACAAAGGTCAGTCCAGCGGTTCCTTCGGA
CTTCCCCAGGTCGAACACCGCCTTCTTCGCCGTCTGTCCCTGGCTCTTGT
GCATGGTAATCGCCCAGCACAGTCCGAGAGGTAGCTGCTCTCGCGACTCC
TGCTTTCTCTCGTCCCCCGTGGCACTCCATGAAGTCTCTACCGCAGCGAT
GGGGACACACACCTCATACCGCGGGTCACCAGACCACGCTGGGCCGGAGC
CTTCTCCCCTGGAGCCCATACAATGTCAACAACTTTCCCCCGAATACCGT
TTACCAGCCTCATTTCCGTCCATAGGTTACGTGTGA
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